Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400000547 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | PGSC0003DMT400000547 | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 32.2 | 43.18 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 30.51 | 40.91 |
| Solyc10g078300.1.1 | Tomato | nucleus | 87.29 | 30.12 |
| PGSC0003DMT400018543 | Potato | nucleus | 86.44 | 29.82 |
| PGSC0003DMT400085411 | Potato | nucleus | 36.44 | 24.86 |
| KRH33305 | Soybean | nucleus | 37.29 | 22.56 |
| CDY52134 | Canola | nucleus | 60.17 | 22.26 |
| Bra005838.1-P | Field mustard | nucleus | 59.32 | 22.01 |
| KRH66702 | Soybean | nucleus | 65.25 | 21.63 |
| AT3G10770.1 | Thale cress | nucleus | 60.17 | 21.32 |
| CDY36274 | Canola | nucleus | 57.63 | 21.32 |
| AT5G05100.1 | Thale cress | nucleus | 58.47 | 21.3 |
| Bra001379.1-P | Field mustard | nucleus | 56.78 | 21.2 |
| CDX73904 | Canola | nucleus | 56.78 | 21.2 |
| CDY00700 | Canola | nucleus | 56.78 | 21.14 |
| KRG95052 | Soybean | nucleus | 63.56 | 21.13 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 62.71 | 20.79 |
| CDY00970 | Canola | nucleus | 59.32 | 20.71 |
| KRH71688 | Soybean | nucleus | 61.02 | 20.28 |
| CDX76005 | Canola | nucleus | 57.63 | 20.12 |
| Bra014678.1-P | Field mustard | nucleus | 57.63 | 20.12 |
| CDY08578 | Canola | nucleus | 58.47 | 20.12 |
| CDY61685 | Canola | nucleus | 57.63 | 19.94 |
| KRH33128 | Soybean | nucleus | 59.32 | 19.89 |
| CDX80941 | Canola | nucleus | 59.32 | 19.89 |
| Bra034145.1-P | Field mustard | nucleus | 58.47 | 19.66 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 57.63 | 19.6 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 57.63 | 19.6 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 57.63 | 19.43 |
| AT2G40960.1 | Thale cress | nucleus | 57.63 | 19.37 |
| AT3G56680.1 | Thale cress | nucleus | 57.63 | 19.26 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 53.39 | 18.58 |
| Os05t0411600-01 | Rice | cytosol | 52.54 | 18.51 |
| Bra029867.1-P | Field mustard | nucleus | 57.63 | 18.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.08 | 18.06 |
| HORVU1Hr1G063590.1 | Barley | plastid | 55.08 | 17.91 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 51.69 | 17.53 |
| Zm00001d010282_P001 | Maize | plastid | 50.0 | 17.1 |
| KXG21997 | Sorghum | nucleus | 50.85 | 17.05 |
| Zm00001d038190_P012 | Maize | nucleus | 50.85 | 17.05 |
| PGSC0003DMT400050190 | Potato | nucleus | 45.76 | 11.46 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400038962 | EnsemblPlantsGene:PGSC0003DMG400015071 | Gene3D:3.30.1370.50 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR001374 | InterPro:IPR036867 | InterPro:R3H_dom | InterPro:R3H_dom_sf | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 |
| PFAM:PF01424 | PGSC:PGSC0003DMG400015071 | SUPFAM:SSF82708 | UniParc:UPI000294B023 | UniProt:M1B7M4 | MapMan:35.2 |
Description
Single-stranded nucleic acid binding R3H [Source:PGSC_GENE;Acc:PGSC0003DMG400015071]
Coordinates
chr11:-:15182999..15183355
Molecular Weight (calculated)
13348.0 Da
IEP (calculated)
8.889
GRAVY (calculated)
-0.448
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGSSAYLS MADPFLVEAL QNPRHRLTIL RMELDIQKFL QSSDVQQFEY PHFPTSYLHL AAHRVPQHYG LQTMVQDSVV DGQGAKIPVT RKPESKYPGV
101: RLSDIPPKQS NSGIKVFH
101: RLSDIPPKQS NSGIKVFH
001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.