Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | KRH00851 | AT1G01510.1 | 21798944 |
| AT3G56680.1 | KRH40381 | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66702 | Soybean | nucleus | 92.39 | 92.13 |
| KRH33305 | Soybean | nucleus | 49.01 | 89.23 |
| KRH71688 | Soybean | nucleus | 74.93 | 74.93 |
| KRH33128 | Soybean | nucleus | 74.08 | 74.72 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 64.79 | 64.61 |
| PGSC0003DMT400038962 | Potato | nucleus | 21.13 | 63.56 |
| Solyc10g078300.1.1 | Tomato | nucleus | 55.77 | 57.89 |
| PGSC0003DMT400018543 | Potato | nucleus | 55.21 | 57.31 |
| AT3G56680.1 | Thale cress | nucleus | 50.14 | 50.42 |
| AT2G40960.1 | Thale cress | nucleus | 49.58 | 50.14 |
| Bra014678.1-P | Field mustard | nucleus | 47.04 | 49.41 |
| CDX76005 | Canola | nucleus | 47.04 | 49.41 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 47.04 | 49.26 |
| AT5G05100.1 | Thale cress | nucleus | 44.79 | 49.07 |
| CDX73904 | Canola | nucleus | 43.66 | 49.05 |
| CDY36274 | Canola | nucleus | 43.94 | 48.9 |
| CDY00700 | Canola | nucleus | 43.66 | 48.9 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 12.11 | 48.86 |
| CDY52134 | Canola | nucleus | 43.66 | 48.59 |
| Bra005838.1-P | Field mustard | nucleus | 43.1 | 48.11 |
| CDY61685 | Canola | nucleus | 46.2 | 48.09 |
| Bra001379.1-P | Field mustard | nucleus | 42.25 | 47.47 |
| CDY00970 | Canola | nucleus | 45.07 | 47.34 |
| CDY08578 | Canola | nucleus | 45.63 | 47.23 |
| AT3G10770.1 | Thale cress | nucleus | 43.94 | 46.85 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.55 | 46.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.48 | 45.83 |
| Bra034145.1-P | Field mustard | nucleus | 43.94 | 44.44 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 43.38 | 44.25 |
| Os05t0411600-01 | Rice | cytosol | 41.69 | 44.18 |
| Bra029867.1-P | Field mustard | nucleus | 44.79 | 43.21 |
| CDX80941 | Canola | nucleus | 42.54 | 42.9 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 41.41 | 42.0 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 40.85 | 41.79 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 40.28 | 41.21 |
| KXG21997 | Sorghum | nucleus | 38.59 | 38.92 |
| Zm00001d038190_P012 | Maize | nucleus | 38.31 | 38.64 |
| Zm00001d010282_P001 | Maize | plastid | 37.46 | 38.55 |
| HORVU1Hr1G063590.1 | Barley | plastid | 37.46 | 36.64 |
| KRG92033 | Soybean | nucleus | 37.46 | 28.79 |
| KRH34752 | Soybean | nucleus | 36.62 | 28.2 |
Protein Annotations
| EntrezGene:100796710 | Gene3D:3.30.1370.50 | MapMan:35.2 | EMBL:ACUP02012074 | EnsemblPlantsGene:GLYMA_19G126900 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | UniProt:I1N8N8 | InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 |
| EnsemblPlants:KRG95052 | ProteinID:KRG95052 | ProteinID:KRG95052.1 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51673 |
| PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 |
| InterPro:SUZ | UniParc:UPI0001BA5A1D | : | : | : | : |
Description
hypothetical protein
Coordinates
chr19:+:38554918..38558797
Molecular Weight (calculated)
40291.1 Da
IEP (calculated)
8.552
GRAVY (calculated)
-0.805
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPCLSNDS VSGFKDKESM VDPFLVEALQ NPRHRLTILR MELEIQKFLN NADQLHFEFH HFPSSYLRLA AHRVAQHYNM QTMVQDNGLD GQGSKILVRK
101: LPESKYPVVR LSEIPAKQLE NDKSEQKKIV IRPRPNKNSL NDANGVGRKG NPLRSVEERK EEYDRARARI FSSPRSSESG DTSSVVPMDG RYSSTSKDEN
201: ETSKNPMADS ERYISTRDSC STRVAILRDR EKDRSDPDYD RSYGRYARSI PTSAVNLVPF NLQKAQPSFA QYDATFNQLG QMSQTQASLG YIPPSTPIMG
301: PFGTTGLNQT SSEGVYLQWP SAAMMYAHSY DQFRHAVFQA PFGQQPLSFD YSQNY
101: LPESKYPVVR LSEIPAKQLE NDKSEQKKIV IRPRPNKNSL NDANGVGRKG NPLRSVEERK EEYDRARARI FSSPRSSESG DTSSVVPMDG RYSSTSKDEN
201: ETSKNPMADS ERYISTRDSC STRVAILRDR EKDRSDPDYD RSYGRYARSI PTSAVNLVPF NLQKAQPSFA QYDATFNQLG QMSQTQASLG YIPPSTPIMG
301: PFGTTGLNQT SSEGVYLQWP SAAMMYAHSY DQFRHAVFQA PFGQQPLSFD YSQNY
001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.