Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00970 | Canola | nucleus | 90.67 | 92.01 |
| Bra029867.1-P | Field mustard | nucleus | 92.42 | 86.14 |
| AT3G10770.1 | Thale cress | nucleus | 79.88 | 82.28 |
| CDY36274 | Canola | nucleus | 75.51 | 81.19 |
| CDY00700 | Canola | nucleus | 73.47 | 79.5 |
| CDX73904 | Canola | nucleus | 72.59 | 78.8 |
| CDY52134 | Canola | nucleus | 62.68 | 67.4 |
| CDX80941 | Canola | nucleus | 60.64 | 59.09 |
| PGSC0003DMT400038962 | Potato | nucleus | 20.12 | 58.47 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 13.41 | 52.27 |
| KRH33305 | Soybean | nucleus | 28.28 | 49.74 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 49.56 | 47.75 |
| KRH66702 | Soybean | nucleus | 47.81 | 46.07 |
| KRG95052 | Soybean | nucleus | 47.23 | 45.63 |
| KRH33128 | Soybean | nucleus | 45.19 | 44.03 |
| KRH71688 | Soybean | nucleus | 45.19 | 43.66 |
| Solyc10g078300.1.1 | Tomato | nucleus | 42.86 | 42.98 |
| CDX76005 | Canola | nucleus | 42.27 | 42.9 |
| CDY61685 | Canola | nucleus | 42.27 | 42.52 |
| PGSC0003DMT400018543 | Potato | nucleus | 41.98 | 42.11 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 41.11 | 41.59 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 40.82 | 40.23 |
| Os05t0411600-01 | Rice | cytosol | 38.48 | 39.4 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.23 | 38.33 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 38.78 | 38.33 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 38.48 | 38.04 |
| Zm00001d010282_P001 | Maize | plastid | 38.19 | 37.97 |
| KXG21997 | Sorghum | nucleus | 38.48 | 37.5 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 38.19 | 37.43 |
| Zm00001d038190_P012 | Maize | nucleus | 38.19 | 37.22 |
| HORVU1Hr1G063590.1 | Barley | plastid | 33.82 | 31.96 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | GO:A0A078F9W3 | UniProt:A0A078F9W3 | EnsemblPlants:CDY08578 | ProteinID:CDY08578 |
| ProteinID:CDY08578.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00000368001 |
| InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51061 |
| PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 |
| SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI0004EE59B0 | SEG:seg | : | : |
Description
BnaA05g28140DBnaA05g28140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9W3]
Coordinates
chrLK031986:+:782389..784467
Molecular Weight (calculated)
37823.2 Da
IEP (calculated)
7.861
GRAVY (calculated)
-0.712
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAAAAM TEKEAMVDPF LVEALQNPRH RLTILRMELD IQKFFQNPEQ LQFEFSPFPT SYLRLAAHRV AQHYGLVTMA LDNGGGAVDG SDNRILVTKT
101: AESRFPHVCL SEIPVKQPEN GRPEGGFKIA IKARPKRGSG SGGSGSGVQQ NLQRSVEERK EEYDKARARI FNSPGSSDSE DSSSLRAPPP PPPEVKNTSV
201: NRNEAEVAVS NNSLDAGGSR ESGRTSVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFNPM PMHIPFHDGG FPQMPRGHQA NLNYGHPFNP
301: AMSPFISNPA AYTPWPNSPA MNYAHSLNGP DTNLFRHPSA SNP
101: AESRFPHVCL SEIPVKQPEN GRPEGGFKIA IKARPKRGSG SGGSGSGVQQ NLQRSVEERK EEYDKARARI FNSPGSSDSE DSSSLRAPPP PPPEVKNTSV
201: NRNEAEVAVS NNSLDAGGSR ESGRTSVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFNPM PMHIPFHDGG FPQMPRGHQA NLNYGHPFNP
301: AMSPFISNPA AYTPWPNSPA MNYAHSLNGP DTNLFRHPSA SNP
001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP
Arabidopsis Description
Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.