CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08578	Canola	nucleus	92.01	90.67
AT3G10770.1	Thale cress	nucleus	84.32	85.59
CDX73904	Canola	nucleus	76.92	82.28
CDY00700	Canola	nucleus	76.63	81.7
CDY36274	Canola	nucleus	76.63	81.19
CDY52134	Canola	nucleus	61.83	65.52
PGSC0003DMT400038962	Potato	nucleus	20.71	59.32
CDX80941	Canola	nucleus	61.24	58.81
CDY56775	Canola	cytosol, mitochondrion, nucleus, plastid	13.61	52.27
KRH33305	Soybean	nucleus	28.99	50.26
VIT_08s0040g00890.t01	Wine grape	nucleus	48.82	46.35
KRH66702	Soybean	nucleus	47.93	45.51
KRG95052	Soybean	nucleus	47.34	45.07
KRH33128	Soybean	nucleus	45.27	43.47
KRH71688	Soybean	nucleus	45.27	43.1
GSMUA_Achr7P21160_001	Banana	nucleus	42.01	41.89
PGSC0003DMT400018543	Potato	nucleus	42.31	41.81
Solyc10g078300.1.1	Tomato	nucleus	42.31	41.81
CDY61685	Canola	nucleus	41.72	41.35
CDX76005	Canola	nucleus	41.12	41.12
GSMUA_Achr1P04410_001	Banana	nucleus	42.01	40.8
Os05t0411600-01	Rice	cytosol	39.65	40.0
GSMUA_AchrUn_...	Banana	nucleus	41.12	38.61
TraesCS1D01G257500.2	Wheat	nucleus	39.35	38.33
TraesCS1A01G258200.1	Wheat	nucleus	39.05	38.04
TraesCS1B01G268700.1	Wheat	nucleus	38.76	37.43
Zm00001d010282_P001	Maize	plastid	38.17	37.39
KXG21997	Sorghum	nucleus	38.46	36.93
Zm00001d038190_P012	Maize	nucleus	38.17	36.65
HORVU1Hr1G063590.1	Barley	plastid	34.32	31.96

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	GO:A0A078EFV9	EnsemblPlants:CDY00970	ProteinID:CDY00970	ProteinID:CDY00970.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00110983001	InterPro:IPR001374
InterPro:IPR024771	InterPro:IPR036867	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673
PANTHER:PTHR15672	PANTHER:PTHR15672:SF15	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708
InterPro:SUZ	UniParc:UPI0004EE5261	SEG:seg	:	:	:

Description

BnaC05g42300D

Coordinates

chrLK031923:-:354247..356478

Molecular Weight (calculated)

37411.7 Da

IEP (calculated)

7.861

GRAVY (calculated)

-0.755

Length

338 amino acids

Sequence
(BLAST)

001: MAAAAMTEKE AMVDPFLVEA LQNPRHRLTI LRMELDIQKF FQNPDQLQFE FSPFPTSYLR LAAHRVAQHY GLVTMALDNG GGAVDGSDNR ILVTKTAESR
101: FPHVCLSEIP VKQPENGRPE GGFKIAIKAR PKRGSGSGGS GSGVQQNLQR SVEERKEEYD KARARIFNSP GSSDSEDSSS LRAPPPPPEV KNTSVNRSEA
201: EVAVSNNSPD AGGSRESGRT SVAIIRDREK DRYDPDYDRS YDRYVVDPAY RYVRVMPSGQ SFNPMPMHIP FHDGGFPQMP RGHQANLNYG HPFNPAMSPF
301: INNPAAYTPW PNSPAMNYAH SLNGPDTNLF RHPSASNP

Best Arabidopsis Sequence Match ( AT3G10770.1 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.