Factsheet for GSMUA_Achr1P04410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P03730_001
GSMUA_Achr2P11860_001
GSMUA_Achr3P25070_001
GSMUA_Achr5P10290_001
GSMUA_Achr5P10300_001
GSMUA_Achr5P13770_001
GSMUA_Achr7P14150_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56680.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr1P03730_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr2P11860_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr5P10290_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr5P10300_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr5P13770_001	AT1G01510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	66.67	64.44
GSMUA_Achr7P21160_001	Banana	nucleus	55.46	56.93
PGSC0003DMT400038962	Potato	nucleus	17.53	51.69
VIT_08s0040g00890.t01	Wine grape	nucleus	51.15	50.0
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.36	48.86
KRH33305	Soybean	nucleus	27.3	48.72
CDY56775	Canola	cytosol, mitochondrion, nucleus, plastid	11.49	45.45
Solyc10g078300.1.1	Tomato	nucleus	43.68	44.44
CDX73904	Canola	nucleus	39.94	43.99
CDY36274	Canola	nucleus	40.23	43.89
PGSC0003DMT400018543	Potato	nucleus	43.1	43.86
CDY00700	Canola	nucleus	39.66	43.53
KRG95052	Soybean	nucleus	44.25	43.38
Os05t0411600-01	Rice	cytosol	41.67	43.28
AT5G05100.1	Thale cress	nucleus	40.23	43.21
AT3G56680.1	Thale cress	nucleus	43.68	43.06
KRH66702	Soybean	nucleus	43.97	42.98
KRH33128	Soybean	nucleus	43.39	42.9
KRH71688	Soybean	nucleus	43.68	42.82
Bra001379.1-P	Field mustard	nucleus	38.79	42.72
CDY52134	Canola	nucleus	39.08	42.63
Bra005838.1-P	Field mustard	nucleus	38.79	42.45
CDY00970	Canola	nucleus	40.8	42.01
AT3G10770.1	Thale cress	nucleus	39.66	41.44
CDX76005	Canola	nucleus	40.23	41.42
Bra014678.1-P	Field mustard	nucleus	40.23	41.42
AT2G40960.1	Thale cress	nucleus	41.67	41.31
CDY08578	Canola	nucleus	40.23	40.82
CDY61685	Canola	nucleus	39.94	40.76
TraesCS1B01G268700.1	Wheat	nucleus	40.52	40.29
TraesCS1A01G258200.1	Wheat	nucleus	39.94	40.06
Bra034145.1-P	Field mustard	nucleus	40.23	39.89
KXG21997	Sorghum	nucleus	39.37	38.92
TraesCS1D01G257500.2	Wheat	nucleus	38.79	38.9
Zm00001d038190_P012	Maize	nucleus	38.22	37.78
Zm00001d010282_P001	Maize	plastid	37.36	37.68
CDX80941	Canola	nucleus	37.93	37.5
Bra029867.1-P	Field mustard	nucleus	39.66	37.5
HORVU1Hr1G063590.1	Barley	plastid	35.06	33.61
GSMUA_Achr11P...	Banana	nucleus	33.91	26.34
GSMUA_Achr6P19370_001	Banana	nucleus	33.91	25.0

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr1G04410_001	EnsemblPlants:GSMUA_Achr1P04410_001	EnsemblPlants:GSMUA_Achr1T04410_001	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867
UniProt:M0RWZ9	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF15	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
UniParc:UPI000294E18B	SEG:seg	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G04410_001]

Coordinates

chr1:+:3693886..3698730

Molecular Weight (calculated)

39477.5 Da

IEP (calculated)

6.249

GRAVY (calculated)

-0.637

Length

348 amino acids

Sequence
(BLAST)

001: MEPQAADSGA SPAAAPVQKE RESIFGQVDP FLIEALENPR HRLTVLRMEL DIQRFMQNPD QQQFEFQHLP TSYLRCAAHR VAQHFGLQTM ALEDAVDGLG
101: NRVVAKKTPD SKFPYVCLSE LPAKVPENEI IEQVKIAIRP RSKIASPGDA DHLGAKRSAT RTVEERKEEY DKARARIFSG SSSPEVGGPS PPISVDGRSL
201: FLSRDVEYQK TVEEIEKTNS KDGASRMAIF RDREKDRIDP DYDRSYERYV RGLPLSQNFS MPVYSIFQPA YLYYDGGISL FGHLPMDQNN LNYNMHDPTV
301: NAYVVGCNQK INDVVYVQWP SPTMMNSNSM YQAPFYQQHG SFQHTQNC

Best Arabidopsis Sequence Match ( AT3G56680.1 )
(BLAST)

001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR

Arabidopsis Description

AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.