Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52134 | Canola | nucleus | 79.83 | 88.09 |
| AT5G05100.1 | Thale cress | nucleus | 67.33 | 73.15 |
| CDY00700 | Canola | nucleus | 56.53 | 62.78 |
| CDX73904 | Canola | nucleus | 55.97 | 62.34 |
| CDY36274 | Canola | nucleus | 56.25 | 62.07 |
| CDY00970 | Canola | nucleus | 58.81 | 61.24 |
| CDY08578 | Canola | nucleus | 59.09 | 60.64 |
| PGSC0003DMT400038962 | Potato | nucleus | 19.89 | 59.32 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 12.5 | 50.0 |
| KRH33305 | Soybean | nucleus | 26.42 | 47.69 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 46.02 | 45.51 |
| KRH66702 | Soybean | nucleus | 43.47 | 42.98 |
| KRH33128 | Soybean | nucleus | 42.9 | 42.9 |
| KRG95052 | Soybean | nucleus | 42.9 | 42.54 |
| KRH71688 | Soybean | nucleus | 42.9 | 42.54 |
| PGSC0003DMT400018543 | Potato | nucleus | 40.34 | 41.52 |
| Solyc10g078300.1.1 | Tomato | nucleus | 40.34 | 41.52 |
| CDY61685 | Canola | nucleus | 40.06 | 41.35 |
| CDX76005 | Canola | nucleus | 39.2 | 40.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.92 | 38.06 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 36.65 | 38.05 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 37.5 | 37.93 |
| Os05t0411600-01 | Rice | cytosol | 36.08 | 37.91 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 36.08 | 36.6 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 36.08 | 36.6 |
| KXG21997 | Sorghum | nucleus | 36.36 | 36.36 |
| Zm00001d010282_P001 | Maize | plastid | 35.51 | 36.23 |
| Zm00001d038190_P012 | Maize | nucleus | 36.08 | 36.08 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 35.51 | 35.71 |
| HORVU1Hr1G063590.1 | Barley | plastid | 31.25 | 30.3 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | GO:A0A078CUV8 | EnsemblPlants:CDX80941 | ProteinID:CDX80941 | ProteinID:CDX80941.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00134355001 | InterPro:IPR001374 |
| InterPro:IPR024771 | InterPro:IPR036867 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51061 | PFscan:PS51673 |
| PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 |
| InterPro:SUZ | UniParc:UPI0004EE69A1 | SEG:seg | : | : | : |
Description
BnaC03g01950D
Coordinates
chrLK031823:-:931611..933339
Molecular Weight (calculated)
39479.6 Da
IEP (calculated)
8.723
GRAVY (calculated)
-0.597
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAMSEKEA MVDPFLVEAL QNPRHRLTIL RMELDIQKFF QSPEQQQYEF PPYPTSYLRL AAHRVAHHYG LFTTALDGAA LDGSGNRILV TKTGESRYPF
101: VCLSEIPVKQ PEANGRRPQG FKLAIKARPN GGSGGAGGGS GVERNLLRSV EERKEEYEKA RARIFNSPNS SDSEDSSTRA PPPPVQQTKH NNSRLPARHE
201: AESVVDEERN GVGRTSRVAI IRDREKDRYD PDYDRNRYVR VTPPVQNFSP MPPIHLPFHD GVFPQMPRTQ PSISYGHPLN PAMTSTNAPA YTEWPSVTVS
301: YAQTLHASDP NHFRLTFSTL KELFSSSLLN ALYLMLSLCC FLAGTRIPDL WS
101: VCLSEIPVKQ PEANGRRPQG FKLAIKARPN GGSGGAGGGS GVERNLLRSV EERKEEYEKA RARIFNSPNS SDSEDSSTRA PPPPVQQTKH NNSRLPARHE
201: AESVVDEERN GVGRTSRVAI IRDREKDRYD PDYDRNRYVR VTPPVQNFSP MPPIHLPFHD GVFPQMPRTQ PSISYGHPLN PAMTSTNAPA YTEWPSVTVS
301: YAQTLHASDP NHFRLTFSTL KELFSSSLLN ALYLMLSLCC FLAGTRIPDL WS
001: MAAMSDKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ SPEQQQYEFQ PLPTSYLRLI AHRVAQHYGL FTTALEGGGV DGSGNRILAT KTVESRYPYV
101: CLSEIPVKQP EIHGRPEGFK IAIKPRPNRG AGGSGSGSGV EKNLLRSVEE RKEEYDKARA RIFNSPSSSD SEDSSTRAPP PPYPRLDSKH NTACPSRNET
201: EVVVNYNSNP VDVERNGVIR DSGRTSRVAI IRDREKDRYD PDYDRNRYVR VAPPVQNFNP IPIPLPFHDA IFPQMPRTQA SLNYGHPLNP AMTAPSYTEW
301: PSATMTYAQT LNASDVHHFR HPNP
101: CLSEIPVKQP EIHGRPEGFK IAIKPRPNRG AGGSGSGSGV EKNLLRSVEE RKEEYDKARA RIFNSPSSSD SEDSSTRAPP PPYPRLDSKH NTACPSRNET
201: EVVVNYNSNP VDVERNGVIR DSGRTSRVAI IRDREKDRYD PDYDRNRYVR VAPPVQNFNP IPIPLPFHDA IFPQMPRTQA SLNYGHPLNP AMTAPSYTEW
301: PSATMTYAQT LNASDVHHFR HPNP
Arabidopsis Description
Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q93YN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.