Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21997 | Sorghum | nucleus | 82.95 | 82.95 |
| Zm00001d010282_P001 | Maize | plastid | 80.68 | 82.32 |
| Os05t0411600-01 | Rice | cytosol | 66.48 | 69.85 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 67.33 | 68.3 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 66.48 | 67.44 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 67.05 | 67.43 |
| HORVU1Hr1G063590.1 | Barley | plastid | 60.8 | 58.95 |
| PGSC0003DMT400038962 | Potato | nucleus | 17.05 | 50.85 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 12.22 | 48.86 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.36 | 45.45 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 42.05 | 41.57 |
| Zm00001d002863_P001 | Maize | nucleus | 23.01 | 40.7 |
| CDY52134 | Canola | nucleus | 36.65 | 40.44 |
| AT5G05100.1 | Thale cress | nucleus | 37.22 | 40.43 |
| Bra005838.1-P | Field mustard | nucleus | 36.36 | 40.25 |
| Zm00001d016556_P001 | Maize | nucleus | 22.73 | 40.2 |
| CDY36274 | Canola | nucleus | 36.36 | 40.13 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 38.64 | 40.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.91 | 40.0 |
| KRH33128 | Soybean | nucleus | 39.49 | 39.49 |
| KRH33305 | Soybean | nucleus | 21.88 | 39.49 |
| KRH71688 | Soybean | nucleus | 39.77 | 39.44 |
| CDX73904 | Canola | nucleus | 35.23 | 39.24 |
| CDX76005 | Canola | nucleus | 37.5 | 39.05 |
| KRH66702 | Soybean | nucleus | 39.49 | 39.04 |
| CDY00700 | Canola | nucleus | 34.94 | 38.8 |
| Bra014678.1-P | Field mustard | nucleus | 36.93 | 38.46 |
| KRG95052 | Soybean | nucleus | 38.64 | 38.31 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 37.78 | 38.22 |
| CDY08578 | Canola | nucleus | 37.22 | 38.19 |
| CDY00970 | Canola | nucleus | 36.65 | 38.17 |
| AT3G56680.1 | Thale cress | nucleus | 38.07 | 37.96 |
| AT3G10770.1 | Thale cress | nucleus | 35.8 | 37.84 |
| CDY61685 | Canola | nucleus | 36.65 | 37.83 |
| Zm00001d042021_P001 | Maize | nucleus | 19.6 | 37.7 |
| Bra001379.1-P | Field mustard | nucleus | 33.81 | 37.66 |
| Solyc10g078300.1.1 | Tomato | nucleus | 36.36 | 37.43 |
| PGSC0003DMT400018543 | Potato | nucleus | 36.08 | 37.13 |
| Bra034145.1-P | Field mustard | nucleus | 36.36 | 36.47 |
| AT2G40960.1 | Thale cress | nucleus | 36.08 | 36.18 |
| CDX80941 | Canola | nucleus | 36.08 | 36.08 |
| Bra029867.1-P | Field mustard | nucleus | 36.93 | 35.33 |
| Zm00001d030359_P001 | Maize | nucleus | 23.3 | 30.26 |
| Zm00001d005338_P005 | Maize | nucleus | 32.95 | 25.05 |
| Zm00001d036628_P001 | Maize | cytosol | 16.76 | 24.18 |
| Zm00001d019875_P001 | Maize | nucleus | 31.25 | 21.36 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | EntrezGene:732783 | UniProt:A0A1D6M4C0 | ProteinID:AQK85989.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | PFAM:PF01424 |
| PFAM:PF12752 | PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | InterPro:R3H_dom |
| InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI0008435005 | EnsemblPlantsGene:Zm00001d038190 |
| EnsemblPlants:Zm00001d038190_P012 | EnsemblPlants:Zm00001d038190_T012 | SEG:seg | : | : | : |
Description
Single-stranded nucleic acid binding R3H protein
Coordinates
chr6:+:151016952..151025813
Molecular Weight (calculated)
39201.0 Da
IEP (calculated)
5.880
GRAVY (calculated)
-0.455
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSPAAADV SPLPPTAAAD EAARATETVV VDERVASHVD PFLVEALDNP RHRLMVLRME LDIQNFMQNP QLQEFEFQNF PTSYLRCAAH RVAQHYGLET
101: IVADSLVEGS VSRIVARKTA ESRYPAIFLS EVPSNQARND HETAEKLKFV IYQRPKAFQN GSADSRNKSG VPKTVDERIE EYNKARARIF NGSISADSDA
201: ASIMGTLSTG KDEPVNVDPS VDETKVSTMN SRSRVAVFKD TEKDRSDPDY DRNYKRYVRS SVPGFNLSPG VFNFVVPQFM QYDIGYVQSP GMSTNQHTMY
301: FGQPDLTIGS SGAAVYRHWP TPTMMYPHCY DNVSPMMSQF VLAGSSVPVF QP
101: IVADSLVEGS VSRIVARKTA ESRYPAIFLS EVPSNQARND HETAEKLKFV IYQRPKAFQN GSADSRNKSG VPKTVDERIE EYNKARARIF NGSISADSDA
201: ASIMGTLSTG KDEPVNVDPS VDETKVSTMN SRSRVAVFKD TEKDRSDPDY DRNYKRYVRS SVPGFNLSPG VFNFVVPQFM QYDIGYVQSP GMSTNQHTMY
301: FGQPDLTIGS SGAAVYRHWP TPTMMYPHCY DNVSPMMSQF VLAGSSVPVF QP
001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.