CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90032
CDX90038
CDY15172
CDY15177

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56680.1	CDX90032	AT1G01440.1	21798944
AT3G56680.1	CDY15177	AT1G01440.1	21798944
AT3G56680.1	CDX90038	AT1G01510.1	21798944
AT3G56680.1	CDY15172	AT1G01510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	96.59	96.59
PGSC0003DMT400038962	Potato	nucleus	40.91	30.51
KRH33305	Soybean	nucleus	43.18	19.49
CDY61685	Canola	nucleus	65.91	17.01
CDX76005	Canola	nucleus	63.64	16.57
AT3G56680.1	Thale cress	nucleus	62.5	15.58
CDY00700	Canola	nucleus	50.0	13.88
CDY52134	Canola	nucleus	50.0	13.79
VIT_08s0040g00890.t01	Wine grape	nucleus	55.68	13.76
CDY00970	Canola	nucleus	52.27	13.61
CDX73904	Canola	nucleus	48.86	13.61
CDY36274	Canola	nucleus	48.86	13.48
CDY08578	Canola	nucleus	52.27	13.41
Solyc10g078300.1.1	Tomato	nucleus	51.14	13.16
PGSC0003DMT400018543	Potato	nucleus	48.86	12.57
CDX80941	Canola	nucleus	50.0	12.5
KRH66702	Soybean	nucleus	48.86	12.08
KRH71688	Soybean	nucleus	47.73	11.83
TraesCS1D01G257500.2	Wheat	nucleus	46.59	11.82
TraesCS1A01G258200.1	Wheat	nucleus	46.59	11.82
TraesCS1B01G268700.1	Wheat	nucleus	46.59	11.71
KRH33128	Soybean	nucleus	46.59	11.65
KRG95052	Soybean	nucleus	46.59	11.55
GSMUA_Achr1P04410_001	Banana	nucleus	45.45	11.49
GSMUA_AchrUn_...	Banana	nucleus	46.59	11.39
Zm00001d038190_P012	Maize	nucleus	45.45	11.36
Os05t0411600-01	Rice	cytosol	43.18	11.34
GSMUA_Achr7P21160_001	Banana	nucleus	43.18	11.21
KXG21997	Sorghum	nucleus	44.32	11.08
HORVU1Hr1G063590.1	Barley	plastid	45.45	11.02
Zm00001d010282_P001	Maize	plastid	43.18	11.01

Protein Annotations

EnsemblPlants:CDY56775	EnsemblPlantsGene:GSBRNA2T00020068001	Gene3D:3.30.1370.50	GO:A0A078J124	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR001374	InterPro:IPR036867	InterPro:R3H_dom	InterPro:R3H_dom_sf	PANTHER:PTHR15672
PANTHER:PTHR15672:SF15	PFAM:PF01424	ProteinID:CDY56775	ProteinID:CDY56775.1	SUPFAM:SSF82708	UniParc:UPI0004EECDD9
UniProt:A0A078J124	MapMan:35.2	:	:	:	:

Description

BnaAnng14410DBnaAnng14410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J124]

Coordinates

chrLK033517:-:26627..26893

Molecular Weight (calculated)

9949.8 Da

IEP (calculated)

7.606

GRAVY (calculated)

-0.230

Length

88 amino acids

Sequence
(BLAST)

1: MGMELDVQRF LQQQFDFQHF PISYLRFAAH RVANQYGLAT PVQDSAAVDG NENIILVTNT AATQSEYQHM KVSIKSRPSK VYLSVTCP

Best Arabidopsis Sequence Match ( AT3G56680.1 )
(BLAST)

001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR

Arabidopsis Description

AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.