Factsheet for GSMUA_Achr7P21160_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P03730_001
GSMUA_Achr2P11860_001
GSMUA_Achr3P25070_001
GSMUA_Achr5P10290_001
GSMUA_Achr5P10300_001
GSMUA_Achr5P13770_001
GSMUA_Achr7P14150_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56680.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr1P03730_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr2P11860_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr5P10290_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr5P10300_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr5P13770_001	AT1G01510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	61.36	57.78
GSMUA_Achr1P04410_001	Banana	nucleus	56.93	55.46
PGSC0003DMT400038962	Potato	nucleus	18.58	53.39
VIT_08s0040g00890.t01	Wine grape	nucleus	53.69	51.12
KRH33305	Soybean	nucleus	29.2	50.77
PGSC0003DMT400018543	Potato	nucleus	48.67	48.25
KRH71688	Soybean	nucleus	50.15	47.89
Solyc10g078300.1.1	Tomato	nucleus	48.08	47.66
KRH33128	Soybean	nucleus	49.26	47.44
KRG95052	Soybean	nucleus	49.26	47.04
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.09	46.59
KRH66702	Soybean	nucleus	48.67	46.35
Os05t0411600-01	Rice	cytosol	44.25	44.78
TraesCS1A01G258200.1	Wheat	nucleus	44.84	43.8
CDY61685	Canola	nucleus	43.95	43.7
AT2G40960.1	Thale cress	nucleus	45.13	43.59
CDY36274	Canola	nucleus	41.0	43.57
CDX76005	Canola	nucleus	43.36	43.49
Bra014678.1-P	Field mustard	nucleus	43.36	43.49
CDX73904	Canola	nucleus	40.41	43.35
AT5G05100.1	Thale cress	nucleus	41.3	43.21
CDY56775	Canola	cytosol, mitochondrion, nucleus, plastid	11.21	43.18
TraesCS1B01G268700.1	Wheat	nucleus	44.54	43.14
AT3G56680.1	Thale cress	nucleus	44.84	43.06
CDY00700	Canola	nucleus	39.82	42.59
Bra001379.1-P	Field mustard	nucleus	39.53	42.41
TraesCS1D01G257500.2	Wheat	nucleus	43.36	42.36
KXG21997	Sorghum	nucleus	43.95	42.33
CDY00970	Canola	nucleus	41.89	42.01
Bra005838.1-P	Field mustard	nucleus	38.64	41.2
CDY08578	Canola	nucleus	41.59	41.11
Zm00001d010282_P001	Maize	plastid	41.3	40.58
AT3G10770.1	Thale cress	nucleus	39.82	40.54
CDY52134	Canola	nucleus	38.05	40.44
Bra034145.1-P	Field mustard	nucleus	41.0	39.6
Zm00001d038190_P012	Maize	nucleus	40.12	38.64
Bra029867.1-P	Field mustard	nucleus	41.89	38.59
HORVU1Hr1G063590.1	Barley	plastid	40.12	37.47
CDX80941	Canola	nucleus	38.05	36.65
GSMUA_Achr11P...	Banana	nucleus	32.15	24.33
GSMUA_Achr6P19370_001	Banana	nucleus	33.33	23.94

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr7G21160_001
EnsemblPlants:GSMUA_Achr7P21160_001	EnsemblPlants:GSMUA_Achr7T21160_001	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	UniProt:M0TJF3
PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672	PANTHER:PTHR15672:SF15
InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ	UniParc:UPI000296FCDE
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G21160_001]

Coordinates

chr7:-:24029448..24033250

Molecular Weight (calculated)

38801.4 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.725

Length

339 amino acids

Sequence
(BLAST)

001: MDPPAADAQN EREGFLAQVD SFLVDALENP RHRLTVLRME LAIQRFMQNP DQHQFEFQHL PTSYLRCAAH RVAQHYGLHT MSLDNSVDGL GSRVIARKTP
101: NSKYPAICLS EVPPKQNEKE IAEQFKIAIR PRPMKGCLSD DVELGLKKGA VRSVEERKEE YDRARARIFS GSSSSEGDGS LSADSIDRRS LPSSMDEQEY
201: ALEEIEKTHS KDSASRVAIF RDMEKDRTDP DYDRSYERYV RGPAAFQNFG LQACNILQPP FVQYEADVSS FSPMSRNLAN PSVNPYFAFG YDQNTKDAFC
301: MQWPNPAMMY AYSYEHFRQA KFQAPLYQQP LSFEHPRNL

Best Arabidopsis Sequence Match ( AT2G40960.1 )
(BLAST)

001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.