Factsheet for GSMUA_Achr6P19370_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	69.07	72.77
VIT_13s0106g00640.t01	Wine grape	nucleus	57.2	57.45
Zm00001d016556_P001	Maize	nucleus	23.94	56.78
Zm00001d002863_P001	Maize	nucleus	23.94	56.78
Zm00001d042021_P001	Maize	nucleus	21.19	54.64
Os09t0568000-01	Rice	nucleus	52.54	54.51
KRH34752	Soybean	nucleus	52.54	53.8
Zm00001d005338_P005	Maize	nucleus	52.33	53.35
HORVU5Hr1G012830.1	Barley	extracellular	16.1	52.78
KRG92033	Soybean	nucleus	51.48	52.6
TraesCS4A01G305400.1	Wheat	nucleus	51.48	52.48
KXG35119	Sorghum	nucleus	51.91	52.13
Solyc11g007110.1.1	Tomato	nucleus	51.91	52.02
TraesCS4D01G007600.1	Wheat	nucleus	52.12	51.68
TraesCS4B01G007100.1	Wheat	nucleus	51.48	51.48
PGSC0003DMT400050190	Potato	nucleus	51.27	51.38
HORVU6Hr1G045180.1	Barley	nucleus	27.54	50.19
PGSC0003DMT400085411	Potato	nucleus	16.95	46.24
HORVU4Hr1G001350.18	Barley	nucleus	51.48	46.02
Zm00001d019875_P001	Maize	nucleus	48.52	44.47
Zm00001d030359_P001	Maize	nucleus	21.19	36.9
Zm00001d036628_P001	Maize	cytosol	17.8	34.43
GSMUA_Achr1P04410_001	Banana	nucleus	25.0	33.91
GSMUA_Achr7P21160_001	Banana	nucleus	23.94	33.33
GSMUA_AchrUn_...	Banana	nucleus	24.15	31.67

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr6G19370_001
EnsemblPlants:GSMUA_Achr6P19370_001	EnsemblPlants:GSMUA_Achr6T19370_001	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	UniProt:M0T8D5
PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23
InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ	UniParc:UPI0002961B50
SEG:seg	:	:	:	:	:

Description

nucleic acid binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G19370_001]

Coordinates

chr6:+:13662440..13667449

Molecular Weight (calculated)

52652.3 Da

IEP (calculated)

6.124

GRAVY (calculated)

-0.737

Length

472 amino acids

Sequence
(BLAST)

001: MEGSAGDPGA PDSWEMADLD ASMSRLLLSS KNGSALSPSL EAEEEEEEEE AAAALDTTRA SLASVDGAEG VPMDAVGQVD QFLREALEKP RERLAILRME
101: QDIVKFICDP TQQQLEFQAI PNSYLRLAAH RIAQHYYLQS VAIQDNSMPD VSGSRILMQK TSFSCRRPPV RLADIPVNFP QEDNNAIPKV AIKQRPQKHS
201: QIMSNANTQS YKTNRQKSVE ERKEEYNRAR ARIFNSNDMS STISYSKDEV KLPDILQDCS ISARSDEKTA IEGSEKNLGR SFSDSSSGNS ILNRTKIEKE
301: PIVSRHKTNN RVAIFRDREV DSKDPDYDRS YDRYMQRFEP GFGFNSGPGT IQPLYSPAVN YNTEFPQLGS GHGAQFPVDH QPQPIPQHLH GPWLSPSAPN
401: VINYGPPAGM MPTYNSNHVH AHSTTSVYMH SSQYSVPPYP GMSFAHPNGH IQSFVQTHQQ LPDTSFGLAR PR

Best Arabidopsis Sequence Match ( AT3G10770.2 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV RVMPSGQSFS PMPIHIPFHD GFFPHMPRGH QANLNYGHPL NPALSPFTHN VASYTPWPNS
301: PVMNYAQPLN GSDTNLYRYP SASNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.