Factsheet for Zm00001d019875_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005338_P005	Maize	nucleus	77.67	86.39
Zm00001d002863_P001	Maize	nucleus	33.2	85.93
Zm00001d042021_P001	Maize	nucleus	30.49	85.79
Zm00001d016556_P001	Maize	nucleus	33.01	85.43
KXG35119	Sorghum	nucleus	76.89	84.26
Os09t0568000-01	Rice	nucleus	61.55	69.67
TraesCS4A01G305400.1	Wheat	nucleus	60.97	67.82
TraesCS4B01G007100.1	Wheat	nucleus	61.36	66.95
TraesCS4D01G007600.1	Wheat	nucleus	59.81	64.71
HORVU5Hr1G012830.1	Barley	extracellular	17.86	63.89
HORVU6Hr1G045180.1	Barley	nucleus	31.84	63.32
HORVU4Hr1G001350.18	Barley	nucleus	61.36	59.85
Zm00001d030359_P001	Maize	nucleus	27.38	52.03
GSMUA_Achr11P...	Banana	nucleus	44.08	50.67
Zm00001d036628_P001	Maize	cytosol	23.5	49.59
VIT_13s0106g00640.t01	Wine grape	nucleus	44.85	49.15
GSMUA_Achr6P19370_001	Banana	nucleus	44.47	48.52
KRG92033	Soybean	nucleus	43.5	48.48
PGSC0003DMT400050190	Potato	nucleus	44.08	48.2
KRH34752	Soybean	nucleus	43.11	48.16
Solyc11g007110.1.1	Tomato	nucleus	43.69	47.77
PGSC0003DMT400085411	Potato	nucleus	14.95	44.51
Zm00001d010282_P001	Maize	plastid	21.36	31.88
Zm00001d038190_P012	Maize	nucleus	21.36	31.25

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	UniProt:A0A1D6I0N0	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001374	InterPro:IPR024771
InterPro:IPR036867	ProteinID:ONM53827.1	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673
PANTHER:PTHR15672	PANTHER:PTHR15672:SF23	InterPro:R3H_dom	InterPro:R3H_dom_sf	SUPFAM:SSF82708	InterPro:SUZ
TMHMM:TMhelix	UniParc:UPI000843C5AA	EnsemblPlantsGene:Zm00001d019875	EnsemblPlants:Zm00001d019875_P001	EnsemblPlants:Zm00001d019875_T001	SEG:seg

Description

Single-stranded nucleic acid binding R3H protein

Coordinates

chr7:-:71972262..71976139

Molecular Weight (calculated)

57200.1 Da

IEP (calculated)

6.579

GRAVY (calculated)

-0.573

Length

515 amino acids

Sequence
(BLAST)

001: MEPAAEDVAA AAPDSWESAD IDGPISRLIL SARRVSSSPD LADNPDPPQP PPALQPQGPP SVPSAAREDL MAQVDQFLRE ALEKPRERLS VLRMEQEILK
101: FIGDPRFTEY EFNGLPTSYL RLAAHRLAQH YFLQSIAIPD NSLPDGTGSH IILRKTSSEC QLPDVCLADI PVNLPQEENI SVAKVAIKQR PQKNLHGMNS
201: SSAHSFRDNH QKSVEERKEE YNKARARIFN NGVSNATDGR SAEEVTSLTT LHRSTSLELN SNNRMGQGAE ITLERTLTTT SASSMSNRSK SDKEPAVNRN
301: RQNNRVAIFR DRESERRDPD YDRSYDRYMQ RFDPGFGFSG GSYTIRPLYA PAVNYNTEFP QLGSAHQSPV AVEQQPRPIA QHMPVTWSAA QATNAIGYGP
401: DGVMGPYSPG HIRAPVRSSV FMHASQQYAI PSRPGVPFVH PQESMGPFAQ VYFLLVQTHQ QQSNASLRFA RPCEWAIREE SKDWGGPVCE QATGMWVSAV
501: LTFLFCLILG PLGTY

Best Arabidopsis Sequence Match ( AT3G10770.1 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.