Factsheet for Solyc11g007110.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050190	Potato	nucleus	95.12	95.12
VIT_13s0106g00640.t01	Wine grape	nucleus	69.21	69.36
PGSC0003DMT400085411	Potato	nucleus	25.27	68.79
KRG92033	Soybean	nucleus	63.69	64.94
KRH34752	Soybean	nucleus	62.21	63.56
HORVU5Hr1G012830.1	Barley	extracellular	18.47	60.42
Zm00001d016556_P001	Maize	nucleus	24.84	58.79
Zm00001d002863_P001	Maize	nucleus	24.84	58.79
Zm00001d042021_P001	Maize	nucleus	22.51	57.92
GSMUA_Achr11P...	Banana	nucleus	53.5	56.25
Os09t0568000-01	Rice	nucleus	50.74	52.53
HORVU6Hr1G045180.1	Barley	nucleus	28.87	52.51
Zm00001d005338_P005	Maize	nucleus	51.59	52.48
TraesCS4A01G305400.1	Wheat	nucleus	51.38	52.27
KXG35119	Sorghum	nucleus	52.02	52.13
GSMUA_Achr6P19370_001	Banana	nucleus	52.02	51.91
TraesCS4D01G007600.1	Wheat	nucleus	52.02	51.47
TraesCS4B01G007100.1	Wheat	nucleus	51.38	51.27
HORVU4Hr1G001350.18	Barley	nucleus	52.23	46.59
Zm00001d019875_P001	Maize	nucleus	47.77	43.69
Zm00001d030359_P001	Maize	nucleus	23.14	40.22
Zm00001d036628_P001	Maize	cytosol	19.96	38.52
Solyc10g078300.1.1	Tomato	nucleus	26.96	37.13

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR001374
InterPro:IPR024771	InterPro:IPR036867	UniProt:K4D4X2	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061
PFscan:PS51673	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393
SUPFAM:SSF82708	InterPro:SUZ	EnsemblPlantsGene:Solyc11g007110.1	EnsemblPlants:Solyc11g007110.1.1	UniParc:UPI000276A0EE	SEG:seg

Description

No Description!

Coordinates

chr11:-:1568263..1573828

Molecular Weight (calculated)

51735.3 Da

IEP (calculated)

7.766

GRAVY (calculated)

-0.730

Length

471 amino acids

Sequence
(BLAST)

001: MEGSVSVADD LGAPPESWEV ADLDASMRRL ILSSSKKDAD SSSSSVNDNQ SELPDSSALA GAGSAAVSGS VSEDVVNTVD QFLREALQNP RERLSVLRME
101: QDVEKFIRDP GRQQMEFQQL PTSYLRLAAH RVAQHYSLQS MVLLDNSLPD GSGSRIIVRK TSECRMPLIR LADIPVNLPQ GDTGVVKVAI KQRPQKGSQL
201: ASGLNSNSSK GNSAKSVEER KEEYNRARAR IFNSNSLSGS SNVKPETESR SQDTYQYGPI GIPQLEEKAS PAGGSDLNTG RSLIDSSTSS SRSARSRTEK
301: EPVGRSKSYN KVAIFRDREI DRKDPDYDRN YDRYMQRFDP GFGFAGGPYT IQPMYAPAIN YNTEFPQLGS ALRSPISAEN QPRPLPQHLP GPWTTPTTPG
401: IGYGPAESMM PPPFSHNHVS ARSNSAIYLH STQYPCQRPG MTFIHPHEQV HQPFSQSHAL QPDGFGLARP R

Best Arabidopsis Sequence Match ( AT3G10770.2 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV RVMPSGQSFS PMPIHIPFHD GFFPHMPRGH QANLNYGHPL NPALSPFTHN VASYTPWPNS
301: PVMNYAQPLN GSDTNLYRYP SASNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.