Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G007100.1 | Wheat | nucleus | 95.68 | 93.86 |
| TraesCS4D01G007600.1 | Wheat | nucleus | 92.87 | 90.34 |
| HORVU6Hr1G045180.1 | Barley | nucleus | 49.24 | 88.03 |
| HORVU4Hr1G001350.18 | Barley | nucleus | 95.46 | 83.71 |
| HORVU5Hr1G012830.1 | Barley | extracellular | 25.7 | 82.64 |
| Os09t0568000-01 | Rice | nucleus | 71.92 | 73.19 |
| KXG35119 | Sorghum | nucleus | 71.27 | 70.21 |
| Zm00001d005338_P005 | Maize | nucleus | 69.76 | 69.76 |
| Zm00001d016556_P001 | Maize | nucleus | 29.37 | 68.34 |
| Zm00001d002863_P001 | Maize | nucleus | 29.37 | 68.34 |
| Zm00001d042021_P001 | Maize | nucleus | 26.78 | 67.76 |
| Zm00001d019875_P001 | Maize | nucleus | 67.82 | 60.97 |
| GSMUA_Achr11P... | Banana | nucleus | 51.62 | 53.35 |
| GSMUA_Achr6P19370_001 | Banana | nucleus | 52.48 | 51.48 |
| Solyc11g007110.1.1 | Tomato | nucleus | 52.27 | 51.38 |
| VIT_13s0106g00640.t01 | Wine grape | nucleus | 51.62 | 50.85 |
| PGSC0003DMT400050190 | Potato | nucleus | 51.62 | 50.74 |
| KRH34752 | Soybean | nucleus | 49.68 | 49.89 |
| KRG92033 | Soybean | nucleus | 49.24 | 49.35 |
| Zm00001d030359_P001 | Maize | nucleus | 28.08 | 47.97 |
| PGSC0003DMT400085411 | Potato | nucleus | 16.63 | 44.51 |
| Zm00001d036628_P001 | Maize | cytosol | 23.11 | 43.85 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 25.7 | 34.29 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51061 |
| PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF23 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 |
| SUPFAM:SSF82708 | InterPro:SUZ | EnsemblPlantsGene:TraesCS4A01G305400 | EnsemblPlants:TraesCS4A01G305400.1 | TIGR:cd02642 | SEG:seg |
Description
No Description!
Coordinates
chr4A:-:600902966..600906006
Molecular Weight (calculated)
51229.6 Da
IEP (calculated)
7.885
GRAVY (calculated)
-0.806
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDAAAAPD SWETADLDGA MSRLLLSSSS PGGAARRVSS SSPDLADDHQ EQPQQQADDP VAQVDQFLRE ALEKPRERLQ VLRMEQDILK FLRDPGQTQF
101: EFQGLPTSYL RLAAHRLAQH YFLISIALPD NSLPDGTSSR IILRKTSAEC RLPAVRLADI PVNLPQEESS AVATKVAIKQ RPQKNQHGGA GAGANSNRGN
201: LQKSVEERKE EYNRARARIF NSSSGSTSPV DGRPADEVVL PNTLHRSTSL ELNSNTRFGE LTEATLERSL TSTASSSRSN NRSRIDKEPP VNRGRQGNRV
301: AIFRDRDSDR KDPDYDRSYD RYMQRFDPGF GFNGGAYTIQ PLYAPAVTYN TEFPQLGSPQ MSPVPVEQQQ PHPMAQHMPG PWSPAQSPNA VGYRPPDGVM
401: PPYSPGQAGA PVRSSVFMHA SQQYAMPSRP GVTFVHPQDS MRPFAQTHHQ QQSEASLRLA RPR
101: EFQGLPTSYL RLAAHRLAQH YFLISIALPD NSLPDGTSSR IILRKTSAEC RLPAVRLADI PVNLPQEESS AVATKVAIKQ RPQKNQHGGA GAGANSNRGN
201: LQKSVEERKE EYNRARARIF NSSSGSTSPV DGRPADEVVL PNTLHRSTSL ELNSNTRFGE LTEATLERSL TSTASSSRSN NRSRIDKEPP VNRGRQGNRV
301: AIFRDRDSDR KDPDYDRSYD RYMQRFDPGF GFNGGAYTIQ PLYAPAVTYN TEFPQLGSPQ MSPVPVEQQQ PHPMAQHMPG PWSPAQSPNA VGYRPPDGVM
401: PPYSPGQAGA PVRSSVFMHA SQQYAMPSRP GVTFVHPQDS MRPFAQTHHQ QQSEASLRLA RPR
001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.