Factsheet for VIT_13s0106g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92033	Soybean	nucleus	69.57	70.78
KRH34752	Soybean	nucleus	69.36	70.72
Solyc11g007110.1.1	Tomato	nucleus	69.36	69.21
PGSC0003DMT400050190	Potato	nucleus	69.36	69.21
GSMUA_Achr11P...	Banana	nucleus	57.87	60.71
Zm00001d016556_P001	Maize	nucleus	25.11	59.3
Zm00001d002863_P001	Maize	nucleus	25.11	59.3
Zm00001d042021_P001	Maize	nucleus	22.34	57.38
PGSC0003DMT400085411	Potato	nucleus	21.06	57.23
GSMUA_Achr6P19370_001	Banana	nucleus	57.45	57.2
HORVU5Hr1G012830.1	Barley	extracellular	17.02	55.56
Os09t0568000-01	Rice	nucleus	52.34	54.07
Zm00001d005338_P005	Maize	nucleus	51.7	52.48
KXG35119	Sorghum	nucleus	52.13	52.13
TraesCS4D01G007600.1	Wheat	nucleus	52.34	51.68
TraesCS4A01G305400.1	Wheat	nucleus	50.85	51.62
TraesCS4B01G007100.1	Wheat	nucleus	50.85	50.64
HORVU6Hr1G045180.1	Barley	nucleus	27.66	50.19
HORVU4Hr1G001350.18	Barley	nucleus	51.06	45.45
Zm00001d019875_P001	Maize	nucleus	49.15	44.85
Zm00001d030359_P001	Maize	nucleus	23.4	40.59
VIT_08s0040g00890.t01	Wine grape	nucleus	29.36	38.76
Zm00001d036628_P001	Maize	cytosol	19.36	37.3

Protein Annotations

EntrezGene:100255059	wikigene:100255059	Gene3D:3.30.1370.50	MapMan:35.2	EMBL:AM436582	ProteinID:CAN60634
ProteinID:CAN60634.1	ProteinID:CCB58765	ProteinID:CCB58765.1	UniProt:F6HVQ2	EMBL:FN596257	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	EntrezGene:LOC100255059
wikigene:LOC100255059	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF23	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
UniParc:UPI0002109C50	ArrayExpress:VIT_13s0106g00640	EnsemblPlantsGene:VIT_13s0106g00640	EnsemblPlants:VIT_13s0106g00640.t01	RefSeq:XP_002265099	RefSeq:XP_002265099.2
RefSeq:XP_010658771.1	RefSeq:XP_010658773.1	RefSeq:XP_010658774.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:10370210..10380021

Molecular Weight (calculated)

52060.7 Da

IEP (calculated)

7.711

GRAVY (calculated)

-0.767

Length

470 amino acids

Sequence
(BLAST)

001: MEGSADDLGA PESWEVADLD ESMSRLMLSS SSSKKDSSSS SSLDASVPAS ASASAPALSS SSVPVGSGMI SEDSVNQVDQ FLREALQNPR ERLSILRMEQ
101: DIEKFIHDPT QQQLEFQQLP TSYLRLAAHR VAQHYSLQSM VLLDNNLPDG SGSKIIVRKT SECRLPLIRL ADIPVSLPPE DGGVIKVAIK QRPQKRSQNV
201: SCANSHSFKA NNSKSVEERK EEYNRARARI FNSSSFSGTG GGKPECEPRM QDTFQHGSVS LPKMEEKPVA GSSDVNICRG LVDSSTSSNR SARSRAEKEP
301: IGRYKPNNRV AIFRDREIDR KDPDYDRSYD RYLQRFDPGF GFNGGPYTIQ PMYTPAVNYN TEFPQLGSAH RPQISTEHQP RPLPQHLSGP WPAPSTPTGI
401: GYGHPETMMS PFNPNHVGAR STSTLYLPSS QYPCQRPGMP FIHPHEHVHQ PFSQSHQQQP DTSFGLARPR

Best Arabidopsis Sequence Match ( AT3G10770.1 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.