Factsheet for Zm00001d005338_P005

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042021_P001	Maize	nucleus	38.01	96.17
Zm00001d002863_P001	Maize	nucleus	41.04	95.48
Zm00001d016556_P001	Maize	nucleus	40.82	94.97
KXG35119	Sorghum	nucleus	92.66	91.28
Zm00001d019875_P001	Maize	nucleus	86.39	77.67
Os09t0568000-01	Rice	nucleus	71.27	72.53
TraesCS4A01G305400.1	Wheat	nucleus	69.76	69.76
TraesCS4B01G007100.1	Wheat	nucleus	69.55	68.22
TraesCS4D01G007600.1	Wheat	nucleus	68.68	66.81
HORVU5Hr1G012830.1	Barley	extracellular	20.3	65.28
HORVU6Hr1G045180.1	Barley	nucleus	35.64	63.71
HORVU4Hr1G001350.18	Barley	nucleus	70.63	61.93
Zm00001d030359_P001	Maize	nucleus	32.83	56.09
Zm00001d036628_P001	Maize	cytosol	28.94	54.92
GSMUA_Achr11P...	Banana	nucleus	52.27	54.02
GSMUA_Achr6P19370_001	Banana	nucleus	53.35	52.33
VIT_13s0106g00640.t01	Wine grape	nucleus	52.48	51.7
Solyc11g007110.1.1	Tomato	nucleus	52.48	51.59
PGSC0003DMT400050190	Potato	nucleus	52.27	51.38
KRG92033	Soybean	nucleus	49.68	49.78
KRH34752	Soybean	nucleus	49.03	49.24
PGSC0003DMT400085411	Potato	nucleus	17.93	47.98
Zm00001d010282_P001	Maize	plastid	25.49	34.2
Zm00001d038190_P012	Maize	nucleus	25.05	32.95

Protein Annotations

EntrezGene:103647263	Gene3D:3.30.1370.50	MapMan:35.2	UniProt:A0A096RMF1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	ProteinID:ONM20863.1
ProteinID:ONM20865.1	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF23	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
UniParc:UPI000220EFE0	EnsemblPlantsGene:Zm00001d005338	EnsemblPlants:Zm00001d005338_P005	EnsemblPlants:Zm00001d005338_T005	SEG:seg	:

Description

Single-stranded nucleic acid binding R3H protein

Coordinates

chr2:-:170014479..170018582

Molecular Weight (calculated)

51381.8 Da

IEP (calculated)

7.140

GRAVY (calculated)

-0.756

Length

463 amino acids

Sequence
(BLAST)

001: MEPAAEDAAA AAPDSWETAD IDGPMSRLIL SARRVSSSPD FADDQDPPQP PPTLQPQGAP SAPSDAREDV VAQVDQFLRE ALEKPRERLS VLRMEQEILK
101: FIHDPSRTEY EFNGLPTSYL RLAAHRLAQH YFLQSIAIPD NSLPDGTGSR IILRKTTFDC RLPAVRLADI PVNLPQEDIS VAKVAIKQRP QKNLHGMNSS
201: SAHSSRDNLQ KSVEERKEEY NKARARIFNN SNSSTATDER SAEEVTLPST LHRSTSLELN SSNRIGQGAE ITLERSLTTT SASSRSNRSK IDKEPAVNRN
301: KQNNRVAIFR DRESERKDPD YDRSYDRYMQ RFDPGFGFSG GPYTIQPLYA PAVNYNTEFP QLGSAHRSPV AVEQQPRPIA QHMPASWSVA QASNAIGYGP
401: DGVMGPYSPG APVRSSVFMH ASQQYAIPSR PGVPFAHPQE SMGPFAQTHQ QQPDASLRFA RPR

Best Arabidopsis Sequence Match ( AT3G10770.1 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.