CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005338_P005	Maize	nucleus	91.28	92.66
Zm00001d042021_P001	Maize	nucleus	34.47	88.52
Zm00001d002863_P001	Maize	nucleus	37.45	88.44
Zm00001d016556_P001	Maize	nucleus	37.23	87.94
Zm00001d019875_P001	Maize	nucleus	84.26	76.89
Os09t0568000-01	Rice	nucleus	71.28	73.63
TraesCS4A01G305400.1	Wheat	nucleus	70.21	71.27
TraesCS4B01G007100.1	Wheat	nucleus	70.21	69.92
HORVU5Hr1G012830.1	Barley	extracellular	21.28	69.44
TraesCS4D01G007600.1	Wheat	nucleus	69.36	68.49
HORVU6Hr1G045180.1	Barley	nucleus	36.81	66.8
HORVU4Hr1G001350.18	Barley	nucleus	71.28	63.45
GSMUA_Achr11P...	Banana	nucleus	51.91	54.46
Zm00001d030359_P001	Maize	nucleus	31.06	53.87
VIT_13s0106g00640.t01	Wine grape	nucleus	52.13	52.13
Zm00001d036628_P001	Maize	cytosol	27.02	52.05
Solyc11g007110.1.1	Tomato	nucleus	52.13	52.02
PGSC0003DMT400050190	Potato	nucleus	52.13	52.02
GSMUA_Achr6P19370_001	Banana	nucleus	52.13	51.91
KRH34752	Soybean	nucleus	50.64	51.63
KRG92033	Soybean	nucleus	50.64	51.52
PGSC0003DMT400085411	Potato	nucleus	17.02	46.24
KXG21997	Sorghum	nucleus	25.32	33.81

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	UniProt:A0A1B6QB57	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	EnsemblPlants:KXG35119	ProteinID:KXG35119
ProteinID:KXG35119.1	ProteinID:KXG35120.1	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673
PANTHER:PTHR15672	PANTHER:PTHR15672:SF23	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	EnsemblPlantsGene:SORBI_3002G134600
SUPFAM:SSF82708	InterPro:SUZ	UniParc:UPI00022070F5	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:20018273..20022158

Molecular Weight (calculated)

51981.6 Da

IEP (calculated)

8.828

GRAVY (calculated)

-0.738

Length

470 amino acids

Sequence
(BLAST)

001: MEPTTAEDAA AAAAAPDSWE TADIDGPMSR LILSARRVSS SPDLADDQDP PQPPPPTLQP QSGPASSAAR EDLVAQVDQF LREALEKPRE RLSVLRMEQE
101: ILKFIRDPRR TEFEFNGLPT SYLRLAAHRL AQHYFLQSIA IPDNSLPDGT GSRIILRKTS SECRLPAVRL ADIPVNLPQE ESISVAKVAI KQRPQKNFHG
201: MNSSSAHSSR ENLQKSVEER KEEYNKARAR IFNNSNSSSA TDGRSAEEVT LPSTLHRSTS LELNSSSRMG QGAEITLERS LTTTSASSRS NRSKIDKEPA
301: VNRSRQNNRV AIFRDRESER KDPDYDRSYD RYMQRFDPGF GFSGGPYTIQ PLYAPAVNYN TEFPQLGAAH RSPVAVEQQP RPIAQHMPAS WSVAQASNAI
401: GYGPDGVMGP YSPGHTGAPV RSSVFMHASQ QYAIPSRPGV PFVHPQESMG PFAQTHQQQP DASLRFARPR

Best Arabidopsis Sequence Match ( AT3G10770.1 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.