Factsheet for TraesCS4B01G007100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G305400.1	Wheat	nucleus	93.86	95.68
TraesCS4D01G007600.1	Wheat	nucleus	91.74	90.97
HORVU6Hr1G045180.1	Barley	nucleus	48.31	88.03
HORVU5Hr1G012830.1	Barley	extracellular	25.21	82.64
HORVU4Hr1G001350.18	Barley	nucleus	92.16	82.39
Os09t0568000-01	Rice	nucleus	69.7	72.31
KXG35119	Sorghum	nucleus	69.92	70.21
Zm00001d005338_P005	Maize	nucleus	68.22	69.55
Zm00001d016556_P001	Maize	nucleus	28.18	66.83
Zm00001d002863_P001	Maize	nucleus	28.18	66.83
Zm00001d042021_P001	Maize	nucleus	25.64	66.12
Zm00001d019875_P001	Maize	nucleus	66.95	61.36
GSMUA_Achr11P...	Banana	nucleus	50.42	53.12
GSMUA_Achr6P19370_001	Banana	nucleus	51.48	51.48
Solyc11g007110.1.1	Tomato	nucleus	51.27	51.38
VIT_13s0106g00640.t01	Wine grape	nucleus	50.64	50.85
PGSC0003DMT400050190	Potato	nucleus	50.42	50.53
KRH34752	Soybean	nucleus	48.31	49.46
KRG92033	Soybean	nucleus	47.88	48.92
Zm00001d030359_P001	Maize	nucleus	27.97	48.71
Zm00001d036628_P001	Maize	cytosol	22.67	43.85
PGSC0003DMT400085411	Potato	nucleus	15.89	43.35
TraesCS1B01G268700.1	Wheat	nucleus	25.21	34.0

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061
PFscan:PS51673	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393
SUPFAM:SSF82708	InterPro:SUZ	EnsemblPlantsGene:TraesCS4B01G007100	EnsemblPlants:TraesCS4B01G007100.1	TIGR:cd02642	SEG:seg

Description

No Description!

Coordinates

chr4B:+:4848543..4852830

Molecular Weight (calculated)

52164.7 Da

IEP (calculated)

7.905

GRAVY (calculated)

-0.801

Length

472 amino acids

Sequence
(BLAST)

001: MEEDAAAAVA AAAPDSWETA DLDGAMSRLL LSSSSASPTA RRVSSSPDLA DDRQAQQEQE QDHARGDDPP AQVDHFLREA LEKPRERLQV LRMEQDILKF
101: LRDPGQTQFE FQGLPTSYLR LAAHRLAQHY FLISIALPDN SLPDGTSSRI ILRKTSAECR LPAVRLADIP VNLPQEESSA VATKVAIKQR PQKNQHGGAG
201: AGANSNRGNL QKSVEERKEE YNRARARIFN SSSGSTSPVD GRPADEVVLP NTLHRSTSLE LNSNTRFGEL TEATLERSLT STASSSRSNN RSRIDKEPPV
301: NRGRQGNRVA IFRDRDSDRK DPDYDRSYDR YMQRFDPGFG FNGGAYTIQP LYAPAVTYNT EFPQLGSPQM SPVPVEQQQP HPMAQHMPGP WSPAQSPNAV
401: GYRPPDGVMP PYSPGQAGAP VRSSVFMHAS QQYAMPSRPG VAFVHPQDSM RPFAQTHHQQ QSEASLRLAR PR

Best Arabidopsis Sequence Match ( AT2G40960.1 )
(BLAST)

001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.