Factsheet for Zm00001d030359_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002863_P001	Maize	nucleus	50.55	68.84
Zm00001d016556_P001	Maize	nucleus	50.18	68.34
Zm00001d042021_P001	Maize	nucleus	46.13	68.31
HORVU5Hr1G012830.1	Barley	extracellular	32.84	61.81
Zm00001d036628_P001	Maize	cytosol	44.65	49.59
HORVU6Hr1G045180.1	Barley	nucleus	40.96	42.86
Zm00001d005338_P005	Maize	nucleus	56.09	32.83
KXG35119	Sorghum	nucleus	53.87	31.06
Os09t0568000-01	Rice	nucleus	51.29	30.55
PGSC0003DMT400085411	Potato	nucleus	18.82	29.48
TraesCS4A01G305400.1	Wheat	nucleus	47.97	28.08
TraesCS4B01G007100.1	Wheat	nucleus	48.71	27.97
TraesCS4D01G007600.1	Wheat	nucleus	48.34	27.52
Zm00001d019875_P001	Maize	nucleus	52.03	27.38
HORVU4Hr1G001350.18	Barley	nucleus	49.45	25.38
GSMUA_Achr11P...	Banana	nucleus	40.22	24.33
VIT_13s0106g00640.t01	Wine grape	nucleus	40.59	23.4
Zm00001d038190_P012	Maize	nucleus	30.26	23.3
Solyc11g007110.1.1	Tomato	nucleus	40.22	23.14
PGSC0003DMT400050190	Potato	nucleus	40.22	23.14
KRH34752	Soybean	nucleus	39.11	22.99
KRG92033	Soybean	nucleus	38.75	22.73
Zm00001d010282_P001	Maize	plastid	28.04	22.03
GSMUA_Achr6P19370_001	Banana	nucleus	36.9	21.19

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.1370.50	Gene3D:3.30.70.330	UniProt:A0A1D6KC70	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR001374	InterPro:IPR012677
InterPro:IPR024771	InterPro:IPR036867	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM00871.1	PFAM:PF00076	PFAM:PF01424
PFAM:PF12752	PFscan:PS50102	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23
InterPro:R3H_dom	InterPro:R3H_dom_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF82708	InterPro:SUZ	UniParc:UPI0008426BBF	EnsemblPlantsGene:Zm00001d030359	EnsemblPlants:Zm00001d030359_P001	EnsemblPlants:Zm00001d030359_T001
SEG:seg	:	:	:	:	:

Description

Single-stranded nucleic acid binding R3H protein

Coordinates

chr1:+:125680310..125683149

Molecular Weight (calculated)

30504.9 Da

IEP (calculated)

6.170

GRAVY (calculated)

-0.588

Length

271 amino acids

Sequence
(BLAST)

001: MSRLILSARC VSSSPDFADD QDPPQPPPTL QPQGAPSAPS DALLRMEQEI LKFIHDPSRT EYEFDGLPTS YLRLAAHRLA QHYFLQSIDI PDNSLPDGTG
101: SRIILRKTTF DCRLPVVRLA DIPVNLPQED ISVARVAIKQ RPQKNFHGMN SSSAHSSRDN LQKSVVERKE EYNKARAQIF NNSNRNPNAT TSENKEEMDS
201: RLVFVGNVDY ACTPEEVQQH FNSCGIVNRV TILTDKFGQP KGFAYVEFVE VEAVQEAIKL NESELHGRQL K

Best Arabidopsis Sequence Match ( AT5G51120.1 )
(BLAST)

001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY

Arabidopsis Description

PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.