Factsheet for PGSC0003DMT400050190

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g007110.1.1	Tomato	nucleus	95.12	95.12
VIT_13s0106g00640.t01	Wine grape	nucleus	69.21	69.36
PGSC0003DMT400085411	Potato	nucleus	25.27	68.79
KRG92033	Soybean	nucleus	63.27	64.5
KRH34752	Soybean	nucleus	61.78	63.12
HORVU5Hr1G012830.1	Barley	extracellular	18.47	60.42
Zm00001d016556_P001	Maize	nucleus	24.84	58.79
Zm00001d002863_P001	Maize	nucleus	24.84	58.79
Zm00001d042021_P001	Maize	nucleus	22.51	57.92
GSMUA_Achr11P...	Banana	nucleus	53.29	56.03
Zm00001d005338_P005	Maize	nucleus	51.38	52.27
KXG35119	Sorghum	nucleus	52.02	52.13
Os09t0568000-01	Rice	nucleus	50.32	52.09
TraesCS4A01G305400.1	Wheat	nucleus	50.74	51.62
GSMUA_Achr6P19370_001	Banana	nucleus	51.38	51.27
HORVU6Hr1G045180.1	Barley	nucleus	28.03	50.97
TraesCS4D01G007600.1	Wheat	nucleus	51.38	50.84
TraesCS4B01G007100.1	Wheat	nucleus	50.53	50.42
HORVU4Hr1G001350.18	Barley	nucleus	51.59	46.02
PGSC0003DMT400038962	Potato	nucleus	11.46	45.76
Zm00001d019875_P001	Maize	nucleus	48.2	44.08
Zm00001d030359_P001	Maize	nucleus	23.14	40.22
Zm00001d036628_P001	Maize	cytosol	19.96	38.52
PGSC0003DMT400018543	Potato	nucleus	26.96	37.13

Protein Annotations

EntrezGene:102600752	Gene3D:3.30.1370.50	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	UniProt:M1BPW4	PFAM:PF01424	PFAM:PF12752
EnsemblPlantsGene:PGSC0003DMG400019487	PGSC:PGSC0003DMG400019487	EnsemblPlants:PGSC0003DMT400050190	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF23	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
UniParc:UPI000295D832	RefSeq:XP_006361457.1	SEG:seg	:	:	:

Description

R3h domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019487]

Coordinates

chr11:+:5192434..5199212

Molecular Weight (calculated)

51747.3 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.741

Length

471 amino acids

Sequence
(BLAST)

001: MEGSVSVADD LGAPPESWEV ADLDASMRRL ILSSKKDQSD SSSSSVNNNQ SELPDSSALA GAGSAAVSGS VSEDVVNTVD QFLREALQNP RERLSVLRME
101: QDVEKFIRDP GRQQMEFQQL PTSYLRLAAH RVAQHYSLQS MVLLDNSLPD GSGSRIIVRK TSECRMPLIR LADIPVNLPQ GDTGVVKVAI KQRPQKGSQL
201: ASGLNSNSSK GNSAKSVEER KEEYNRARAR IFNSNSLSGS SNVKPETESR SQDTYQYGPI GIPQLEEKAS PAGGSDLNTG RGLIDSSTSS SRSARSRTEK
301: EPVGRSKSYN KVAIFRDREI DRKDPDYDRN YDRYMQRFDP GFGFAGGPYT IQPMYAPAIN YNTEFPQLGS ALRSPISAEN QPRPLPQHLP GPWATSTTPG
401: IGYGPAESMM PPPFSHNHVS ARSNSAIYLH STQYPCQRPG MTFIHPHEQV HQPFSQSHPL QPDGFGLARP R

Best Arabidopsis Sequence Match ( AT3G56680.1 )
(BLAST)

001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR

Arabidopsis Description

AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.