Factsheet for Zm00001d002863_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042021_P001	Maize	nucleus	91.96	100.0
Zm00001d016556_P001	Maize	nucleus	99.5	99.5
HORVU5Hr1G012830.1	Barley	extracellular	47.74	65.97
Zm00001d036628_P001	Maize	cytosol	62.81	51.23
Zm00001d030359_P001	Maize	nucleus	68.84	50.55
HORVU6Hr1G045180.1	Barley	nucleus	53.77	41.31
Zm00001d005338_P005	Maize	nucleus	95.48	41.04
PGSC0003DMT400085411	Potato	nucleus	34.17	39.31
KXG35119	Sorghum	nucleus	88.44	37.45
Zm00001d019875_P001	Maize	nucleus	85.93	33.2
Os09t0568000-01	Rice	nucleus	68.84	30.11
TraesCS4A01G305400.1	Wheat	nucleus	68.34	29.37
TraesCS4D01G007600.1	Wheat	nucleus	67.84	28.36
TraesCS4B01G007100.1	Wheat	nucleus	66.83	28.18
GSMUA_Achr11P...	Banana	nucleus	60.8	27.01
HORVU4Hr1G001350.18	Barley	nucleus	69.35	26.14
VIT_13s0106g00640.t01	Wine grape	nucleus	59.3	25.11
Solyc11g007110.1.1	Tomato	nucleus	58.79	24.84
PGSC0003DMT400050190	Potato	nucleus	58.79	24.84
Zm00001d010282_P001	Maize	plastid	42.71	24.64
GSMUA_Achr6P19370_001	Banana	nucleus	56.78	23.94
KRG92033	Soybean	nucleus	55.28	23.81
KRH34752	Soybean	nucleus	53.77	23.21
Zm00001d038190_P012	Maize	nucleus	40.7	23.01

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	UniProt:A0A1D6E4U9	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	ProteinID:ONM15522.1	PFAM:PF01424
PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23	InterPro:R3H_dom
InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ	UniParc:UPI0002216497	EnsemblPlantsGene:Zm00001d002863
EnsemblPlants:Zm00001d002863_P001	EnsemblPlants:Zm00001d002863_T001	SEG:seg	:	:	:

Description

Single-stranded nucleic acid binding R3H protein

Coordinates

chr2:-:24931753..24933140

Molecular Weight (calculated)

22385.5 Da

IEP (calculated)

8.239

GRAVY (calculated)

-0.655

Length

199 amino acids

Sequence
(BLAST)

001: MSSSPDFADG QDPPQPPPTL QPQGAPSAPS DVCEGLVAQV DQFLREALEK PRERLSVLRM EQEILKFIHD PSRTEYEFNG LPTSYLRLAA HRLAQHYFLQ
101: SIAIPDNSLP DGTGSRIILR KTTFDCRLPA VRLADIPVNL PQEDISVAKV AIKQRPQKNF HGMNSSSAHS SRDNLQKSVE ERKEEYNKAR ARIFNNRIG

Best Arabidopsis Sequence Match ( AT3G10770.2 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV RVMPSGQSFS PMPIHIPFHD GFFPHMPRGH QANLNYGHPL NPALSPFTHN VASYTPWPNS
301: PVMNYAQPLN GSDTNLYRYP SASNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.