Factsheet for GSMUA_Achr11P18960_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P19370_001	Banana	nucleus	72.77	69.07
Zm00001d016556_P001	Maize	nucleus	27.01	60.8
Zm00001d002863_P001	Maize	nucleus	27.01	60.8
Zm00001d042021_P001	Maize	nucleus	24.33	59.56
HORVU5Hr1G012830.1	Barley	extracellular	18.75	58.33
VIT_13s0106g00640.t01	Wine grape	nucleus	60.71	57.87
Os09t0568000-01	Rice	nucleus	54.91	54.07
Solyc11g007110.1.1	Tomato	nucleus	56.25	53.5
KRH34752	Soybean	nucleus	54.91	53.36
PGSC0003DMT400050190	Potato	nucleus	56.03	53.29
KRG92033	Soybean	nucleus	54.69	53.03
Zm00001d005338_P005	Maize	nucleus	54.02	52.27
KXG35119	Sorghum	nucleus	54.46	51.91
TraesCS4A01G305400.1	Wheat	nucleus	53.35	51.62
PGSC0003DMT400085411	Potato	nucleus	19.87	51.45
TraesCS4B01G007100.1	Wheat	nucleus	53.12	50.42
TraesCS4D01G007600.1	Wheat	nucleus	53.57	50.42
HORVU6Hr1G045180.1	Barley	nucleus	29.02	50.19
HORVU4Hr1G001350.18	Barley	nucleus	53.79	45.64
Zm00001d019875_P001	Maize	nucleus	50.67	44.08
Zm00001d030359_P001	Maize	nucleus	24.33	40.22
Zm00001d036628_P001	Maize	cytosol	21.65	39.75
GSMUA_Achr1P04410_001	Banana	nucleus	26.34	33.91
GSMUA_Achr7P21160_001	Banana	nucleus	24.33	32.15
GSMUA_AchrUn_...	Banana	nucleus	25.67	31.94

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr11G18960_001	EnsemblPlants:GSMUA_Achr11P18960_001	EnsemblPlants:GSMUA_Achr11T18960_001	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867
UniProt:M0RTH6	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF23	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
UniParc:UPI00029679F3	SEG:seg	:	:	:	:

Description

nucleic acid binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G18960_001]

Coordinates

chr11:-:20204092..20208320

Molecular Weight (calculated)

50113.6 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.739

Length

448 amino acids

Sequence
(BLAST)

001: MEGSADGSGA PDSWEMVDLD ASMSRLLLSS KKSPASSPPP DALEEEEEEE AVAALGLSRS SSDTSERVAG VPVDAVSQVD QFLREALEKP RERLAILRME
101: QDIVKFIHDP TQQQLEFQTL PNSYLRLAAH RVAQHYYLQS FAILDNSLPD GSGSRILLRK TSTNCRMPPV RLADIPVNLP QEDGSVVLKV AIKQRPQKHS
201: QNMGNANIHS SKTNYQKSVE ERKEEYNRAR ARIFNSKDSS SSISDPEDEV KLPDTLQECS FISERTDEKS VMKASENYLG RSFTNSRVAI FRDREIDCKD
301: PDYDRSYERY MQRFDPGFGF NGGPYTMPPL YSPAVNYNTE FPQLGSGHRA QVPVDHQPRP IPPHLHGPWL PPSAPTAMNY GPPEGMIPAF SSNHVRGHSN
401: TPVYVHSSQF SVPPRPGMSF PPPDGHIQNF AQTHQQQRDA CFGLARPR

Best Arabidopsis Sequence Match ( AT3G10770.2 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV RVMPSGQSFS PMPIHIPFHD GFFPHMPRGH QANLNYGHPL NPALSPFTHN VASYTPWPNS
301: PVMNYAQPLN GSDTNLYRYP SASNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.