Factsheet for HORVU5Hr1G012830.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 2
extracellular 3
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
TargetP:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042021_P001	Maize	nucleus	65.97	51.91
Zm00001d016556_P001	Maize	nucleus	65.97	47.74
Zm00001d002863_P001	Maize	nucleus	65.97	47.74
HORVU6Hr1G045180.1	Barley	nucleus	80.56	44.79
Zm00001d036628_P001	Maize	cytosol	60.42	35.66
Zm00001d030359_P001	Maize	nucleus	61.81	32.84
PGSC0003DMT400085411	Potato	nucleus	34.03	28.32
TraesCS4A01G305400.1	Wheat	nucleus	82.64	25.7
TraesCS4B01G007100.1	Wheat	nucleus	82.64	25.21
TraesCS4D01G007600.1	Wheat	nucleus	83.33	25.21
HORVU4Hr1G001350.18	Barley	nucleus	84.72	23.11
Os09t0568000-01	Rice	nucleus	67.36	21.32
KXG35119	Sorghum	nucleus	69.44	21.28
Zm00001d005338_P005	Maize	nucleus	65.28	20.3
GSMUA_Achr11P...	Banana	nucleus	58.33	18.75
Solyc11g007110.1.1	Tomato	nucleus	60.42	18.47
PGSC0003DMT400050190	Potato	nucleus	60.42	18.47
Zm00001d019875_P001	Maize	nucleus	63.89	17.86
KRH34752	Soybean	nucleus	55.56	17.35
KRG92033	Soybean	nucleus	54.86	17.1
VIT_13s0106g00640.t01	Wine grape	nucleus	55.56	17.02
GSMUA_Achr6P19370_001	Banana	nucleus	52.78	16.1
HORVU1Hr1G063590.1	Barley	plastid	35.42	14.05

Protein Annotations

EnsemblPlants:HORVU5Hr1G012830.1	EnsemblPlantsGene:HORVU5Hr1G012830	Gene3D:3.30.1370.50	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR001374	InterPro:IPR036867	InterPro:R3H_dom	InterPro:R3H_dom_sf	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23
PFAM:PF01424	PFscan:PS51061	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF82708	UniParc:UPI000B47F03D
UniProt:A0A287QDX0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:39214613..39215933

Molecular Weight (calculated)

16016.4 Da

IEP (calculated)

10.182

GRAVY (calculated)

-0.282

Length

144 amino acids

Sequence
(BLAST)

001: MLGWFNLIAT LYLIAVLRME QDTLKFLRDP GQMQFEFQGL PTSYMRLAAH RLAQHYFLIS IALSDNSLPD GTSSRMILRK TSAECRLPAV HLTDIPVNLP
101: QEETSAVASK VAIKQRPQKN HHGGAGAGAN SSRGNLQKSV EERK

Best Arabidopsis Sequence Match ( AT2G40960.1 )
(BLAST)

001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.