Factsheet for PGSC0003DMT400085411

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042021_P001	Maize	nucleus	39.31	37.16
PGSC0003DMT400038962	Potato	nucleus	24.86	36.44
Zm00001d016556_P001	Maize	nucleus	39.31	34.17
Zm00001d002863_P001	Maize	nucleus	39.31	34.17
HORVU5Hr1G012830.1	Barley	extracellular	28.32	34.03
Solyc11g007110.1.1	Tomato	nucleus	68.79	25.27
PGSC0003DMT400050190	Potato	nucleus	68.79	25.27
VIT_13s0106g00640.t01	Wine grape	nucleus	57.23	21.06
KRG92033	Soybean	nucleus	53.18	19.91
GSMUA_Achr11P...	Banana	nucleus	51.45	19.87
KRH34752	Soybean	nucleus	52.6	19.74
Zm00001d036628_P001	Maize	cytosol	27.17	19.26
Zm00001d030359_P001	Maize	nucleus	29.48	18.82
HORVU6Hr1G045180.1	Barley	nucleus	27.75	18.53
Zm00001d005338_P005	Maize	nucleus	47.98	17.93
KXG35119	Sorghum	nucleus	46.24	17.02
GSMUA_Achr6P19370_001	Banana	nucleus	46.24	16.95
Os09t0568000-01	Rice	nucleus	44.51	16.92
TraesCS4A01G305400.1	Wheat	nucleus	44.51	16.63
TraesCS4D01G007600.1	Wheat	nucleus	45.09	16.39
TraesCS4B01G007100.1	Wheat	nucleus	43.35	15.89
Zm00001d019875_P001	Maize	nucleus	44.51	14.95
HORVU4Hr1G001350.18	Barley	nucleus	45.09	14.77
PGSC0003DMT400018543	Potato	nucleus	27.75	14.04

Protein Annotations

EnsemblPlants:PGSC0003DMT400085411	EnsemblPlantsGene:PGSC0003DMG400034982	Gene3D:3.30.1370.50	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR001374	InterPro:IPR036867	InterPro:R3H_dom	InterPro:R3H_dom_sf	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23
PFAM:PF01424	PFscan:PS51061	PGSC:PGSC0003DMG400034982	SUPFAM:SSF82708	UniParc:UPI000294EBA8	UniProt:M1D9F8
MapMan:35.2	:	:	:	:	:

Description

R3h domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400034982]

Coordinates

chr1:-:7670454..7671249

Molecular Weight (calculated)

19287.3 Da

IEP (calculated)

5.694

GRAVY (calculated)

-0.199

Length

173 amino acids

Sequence
(BLAST)

001: MEGFVPVADD LRAPSKSWEV DGLDASMRRL ILFFSFFDDK GNPQPLPFEC AQALAGAISG RVSKDVVNTV DQFLREALKN PREHLSIMRM EQDVEKFIKD
101: PGQQQMEFQP LPTSYFRLAA HCVAQHYSLQ SMVLLDNSLP DGSGPKILVN MPQGDTGVVK VAIKCYKITN LAN

Best Arabidopsis Sequence Match ( AT5G05100.1 )
(BLAST)

001: MAAMSDKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ SPEQQQYEFQ PLPTSYLRLI AHRVAQHYGL FTTALEGGGV DGSGNRILAT KTVESRYPYV
101: CLSEIPVKQP EIHGRPEGFK IAIKPRPNRG AGGSGSGSGV EKNLLRSVEE RKEEYDKARA RIFNSPSSSD SEDSSTRAPP PPYPRLDSKH NTACPSRNET
201: EVVVNYNSNP VDVERNGVIR DSGRTSRVAI IRDREKDRYD PDYDRNRYVR VAPPVQNFNP IPIPLPFHDA IFPQMPRTQA SLNYGHPLNP AMTAPSYTEW
301: PSATMTYAQT LNASDVHHFR HPNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q93YN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.