Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | EER88427 | AT1G01440.1 | 21798944 |
| AT3G56680.1 | EES03295 | AT1G01440.1 | 21798944 |
| AT3G56680.1 | KXG22639 | AT1G01440.1 | 21798944 |
| AT3G56680.1 | KXG29961 | AT1G01440.1 | 21798944 |
| AT3G56680.1 | OQU92250 | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010282_P001 | Maize | plastid | 84.94 | 86.67 |
| Zm00001d038190_P012 | Maize | nucleus | 82.95 | 82.95 |
| Os05t0411600-01 | Rice | cytosol | 73.86 | 77.61 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 73.86 | 74.93 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 73.86 | 74.29 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 71.88 | 72.91 |
| HORVU1Hr1G063590.1 | Barley | plastid | 67.9 | 65.84 |
| PGSC0003DMT400038962 | Potato | nucleus | 17.05 | 50.85 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 11.93 | 47.73 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.08 | 44.32 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 42.33 | 43.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.03 | 43.06 |
| Bra005838.1-P | Field mustard | nucleus | 37.78 | 41.82 |
| CDY52134 | Canola | nucleus | 37.78 | 41.69 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 41.76 | 41.29 |
| CDY36274 | Canola | nucleus | 37.22 | 41.07 |
| AT5G05100.1 | Thale cress | nucleus | 37.22 | 40.43 |
| KRH33128 | Soybean | nucleus | 39.77 | 39.77 |
| CDY00700 | Canola | nucleus | 35.8 | 39.75 |
| KRH66702 | Soybean | nucleus | 40.06 | 39.61 |
| CDX73904 | Canola | nucleus | 35.51 | 39.56 |
| KRH33305 | Soybean | nucleus | 21.88 | 39.49 |
| KRH71688 | Soybean | nucleus | 39.77 | 39.44 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 38.92 | 39.37 |
| KRG95052 | Soybean | nucleus | 38.92 | 38.59 |
| CDY08578 | Canola | nucleus | 37.5 | 38.48 |
| CDY00970 | Canola | nucleus | 36.93 | 38.46 |
| Bra001379.1-P | Field mustard | nucleus | 34.38 | 38.29 |
| AT3G56680.1 | Thale cress | nucleus | 38.07 | 37.96 |
| AT2G40960.1 | Thale cress | nucleus | 37.78 | 37.89 |
| CDX76005 | Canola | nucleus | 36.36 | 37.87 |
| AT3G10770.1 | Thale cress | nucleus | 35.8 | 37.84 |
| Solyc10g078300.1.1 | Tomato | nucleus | 36.36 | 37.43 |
| Bra014678.1-P | Field mustard | nucleus | 35.8 | 37.28 |
| PGSC0003DMT400018543 | Potato | nucleus | 36.08 | 37.13 |
| Bra034145.1-P | Field mustard | nucleus | 36.93 | 37.04 |
| CDY61685 | Canola | nucleus | 35.51 | 36.66 |
| CDX80941 | Canola | nucleus | 36.36 | 36.36 |
| Bra029867.1-P | Field mustard | nucleus | 36.93 | 35.33 |
| KXG35119 | Sorghum | nucleus | 33.81 | 25.32 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | UniProt:A0A1B6P8B9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | EnsemblPlants:KXG21997 | ProteinID:KXG21997 | ProteinID:KXG21997.1 |
| PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 |
| InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | EnsemblPlantsGene:SORBI_3009G137200 | SUPFAM:SSF82708 | InterPro:SUZ |
| UniParc:UPI0001C80513 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:49392298..49396351
Molecular Weight (calculated)
38918.5 Da
IEP (calculated)
5.635
GRAVY (calculated)
-0.473
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSPASASA AAAAAASPPA ADEAARATET VVVDERVASH VDPFLVEALD NPRHRLMVLR MELDIQNFMQ NPQLQEFEFQ NYPTSYLRCA AHRVAQHYGL
101: ETIVADSLVE GSVSRIVARK TPESRYPAIA LSEVPSRQAR NDHEAAEKLK FVIYQRPKAF QNGSADSRNM NGAPKTVEER IEEYNKARAR IFNGSISADS
201: DAASVLGTLS TGRDEAVNVE PSVDEIKIST MNSRSRVAVF KDTEKDRSDP DYDRNYTRYV RNPVPDFNLS PGAFNFVVPQ FMQYGVGYMQ SPGMSTNQPT
301: VYFGQPDLAM GSSSGATVYP HWPTPAMMYP HCYDNVGPMI SQVPLYQSFN HG
101: ETIVADSLVE GSVSRIVARK TPESRYPAIA LSEVPSRQAR NDHEAAEKLK FVIYQRPKAF QNGSADSRNM NGAPKTVEER IEEYNKARAR IFNGSISADS
201: DAASVLGTLS TGRDEAVNVE PSVDEIKIST MNSRSRVAVF KDTEKDRSDP DYDRNYTRYV RNPVPDFNLS PGAFNFVVPQ FMQYGVGYMQ SPGMSTNQPT
301: VYFGQPDLAM GSSSGATVYP HWPTPAMMYP HCYDNVGPMI SQVPLYQSFN HG
001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
Arabidopsis Description
AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.