Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra033258.1-P | |
| Bra033264.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | Bra033264.1-P | AT1G01440.1 | 21798944 |
| AT3G56680.1 | Bra033258.1-P | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76005 | Canola | nucleus | 96.45 | 96.45 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 17.46 | 67.05 |
| AT3G56680.1 | Thale cress | nucleus | 69.53 | 66.57 |
| PGSC0003DMT400038962 | Potato | nucleus | 20.12 | 57.63 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 54.14 | 51.4 |
| Solyc10g078300.1.1 | Tomato | nucleus | 48.82 | 48.25 |
| KRH33128 | Soybean | nucleus | 50.0 | 48.01 |
| KRH71688 | Soybean | nucleus | 50.3 | 47.89 |
| PGSC0003DMT400018543 | Potato | nucleus | 48.22 | 47.66 |
| KRG95052 | Soybean | nucleus | 49.41 | 47.04 |
| KRH66702 | Soybean | nucleus | 48.52 | 46.07 |
| Bra005838.1-P | Field mustard | nucleus | 41.12 | 43.71 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 43.49 | 43.36 |
| KRH33305 | Soybean | nucleus | 24.85 | 43.08 |
| Bra001379.1-P | Field mustard | nucleus | 39.05 | 41.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.2 | 40.56 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 41.42 | 40.23 |
| Os05t0411600-01 | Rice | cytosol | 38.76 | 39.1 |
| Bra034145.1-P | Field mustard | nucleus | 39.65 | 38.18 |
| Bra029867.1-P | Field mustard | nucleus | 41.42 | 38.04 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 39.05 | 38.04 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 39.05 | 37.71 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 38.46 | 37.46 |
| Zm00001d038190_P012 | Maize | nucleus | 38.46 | 36.93 |
| KXG21997 | Sorghum | nucleus | 37.28 | 35.8 |
| Zm00001d010282_P001 | Maize | plastid | 35.8 | 35.07 |
| HORVU1Hr1G063590.1 | Barley | plastid | 33.43 | 31.13 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | EnsemblPlantsGene:Bra014678 | EnsemblPlants:Bra014678.1 | EnsemblPlants:Bra014678.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | UniProt:M4DDV9 |
| PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 |
| InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI000254477D |
| SEG:seg | : | : | : | : | : |
Description
AT3G56680 (E=4e-121) | nucleic acid binding
Coordinates
chrA04:-:2180891..2182432
Molecular Weight (calculated)
38188.0 Da
IEP (calculated)
8.200
GRAVY (calculated)
-0.675
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSAFTTAAV VTGENGFTVD PFLVEALQNP RHRLTILRME LDVQRFLQSQ EQQQFEFQRF PTSYLRLAAH RVASHYGLAT SVQDGGVDGS ENIILVTKTA
101: VSKFPTVKLS DIPAAKQSES GKFEHMKVSI KTRPSKGSGF EGGEAEKKRG PLRSVEERKE DYDRARARIF NGLTCFSGDE SETQVYERSP SLGKDDSPAP
201: TKNLTLRETG PTSRVAILRD SEKDRFDPDY DRNYKRYIRS LPVNQNSHPP PFNMMQPPYY QMGFTGYNHI PNSHASLNFG LPGNAIMSPY GTTVVHPGDA
301: MYMQVPMMYA HSYEQLRNAS LQAQFCQQPL SFEYMQNR
101: VSKFPTVKLS DIPAAKQSES GKFEHMKVSI KTRPSKGSGF EGGEAEKKRG PLRSVEERKE DYDRARARIF NGLTCFSGDE SETQVYERSP SLGKDDSPAP
201: TKNLTLRETG PTSRVAILRD SEKDRFDPDY DRNYKRYIRS LPVNQNSHPP PFNMMQPPYY QMGFTGYNHI PNSHASLNFG LPGNAIMSPY GTTVVHPGDA
301: MYMQVPMMYA HSYEQLRNAS LQAQFCQQPL SFEYMQNR
001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
Arabidopsis Description
AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.