Factsheet for VIT_08s0040g00890.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0088g00460.t01
VIT_15s0046g02250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56680.1	VIT_03s0088g00460.t01	AT1G01510.1	21798944
AT3G56680.1	VIT_15s0046g02250.t01	AT1G01510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95052	Soybean	nucleus	64.61	64.79
KRH71688	Soybean	nucleus	64.33	64.51
KRH66702	Soybean	nucleus	63.76	63.76
KRH33128	Soybean	nucleus	62.92	63.64
PGSC0003DMT400038962	Potato	nucleus	20.79	62.71
KRH33305	Soybean	nucleus	32.87	60.0
Solyc10g078300.1.1	Tomato	nucleus	57.58	59.94
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.61	59.09
PGSC0003DMT400018543	Potato	nucleus	56.74	59.06
CDY56775	Canola	cytosol, mitochondrion, nucleus, plastid	13.76	55.68
Bra014678.1-P	Field mustard	nucleus	51.4	54.14
CDX76005	Canola	nucleus	51.4	54.14
GSMUA_Achr7P21160_001	Banana	nucleus	51.12	53.69
AT3G56680.1	Thale cress	nucleus	52.81	53.26
CDY61685	Canola	nucleus	50.56	52.79
CDX73904	Canola	nucleus	46.35	52.22
AT5G05100.1	Thale cress	nucleus	47.47	52.16
CDY00700	Canola	nucleus	46.07	51.73
AT2G40960.1	Thale cress	nucleus	50.84	51.57
CDY52134	Canola	nucleus	46.07	51.41
GSMUA_Achr1P04410_001	Banana	nucleus	50.0	51.15
Bra005838.1-P	Field mustard	nucleus	45.22	50.63
CDY36274	Canola	nucleus	44.94	50.16
GSMUA_AchrUn_...	Banana	nucleus	50.28	49.72
CDY08578	Canola	nucleus	47.75	49.56
Bra001379.1-P	Field mustard	nucleus	43.82	49.37
CDY00970	Canola	nucleus	46.35	48.82
AT3G10770.1	Thale cress	nucleus	44.94	48.05
CDX80941	Canola	nucleus	45.51	46.02
Bra034145.1-P	Field mustard	nucleus	45.22	45.87
Bra029867.1-P	Field mustard	nucleus	47.19	45.65
Os05t0411600-01	Rice	cytosol	42.42	45.07
TraesCS1A01G258200.1	Wheat	nucleus	41.57	42.65
TraesCS1B01G268700.1	Wheat	nucleus	41.85	42.57
Zm00001d038190_P012	Maize	nucleus	41.57	42.05
Zm00001d010282_P001	Maize	plastid	40.73	42.03
TraesCS1D01G257500.2	Wheat	nucleus	40.73	41.79
KXG21997	Sorghum	nucleus	41.29	41.76
HORVU1Hr1G063590.1	Barley	plastid	36.8	36.09
VIT_13s0106g00640.t01	Wine grape	nucleus	38.76	29.36

Protein Annotations

EntrezGene:100251643	wikigene:100251643	Gene3D:3.30.1370.50	MapMan:35.2	UniProt:A5AMT9	EMBL:AM430363
ProteinID:CAN73572	ProteinID:CAN73572.1	ProteinID:CBI32816	ProteinID:CBI32816.3	EMBL:FN596008	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	EntrezGene:LOC100251643
wikigene:LOC100251643	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF15	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
TIGR:TC64599	UniParc:UPI000151F047	ArrayExpress:VIT_08s0040g00890	EnsemblPlantsGene:VIT_08s0040g00890	EnsemblPlants:VIT_08s0040g00890.t01	unigene:Vvi.6943
RefSeq:XP_002283240	RefSeq:XP_002283240.1	RefSeq:XP_010653643.1	:	:	:

Description

No Description!

Coordinates

chr8:+:11881201..11892224

Molecular Weight (calculated)

40786.7 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.804

Length

356 amino acids

Sequence
(BLAST)

001: MDSAPYANDV SATPGDKESM VDPFLVEALQ NPRHRLTILR MELDIQRFLQ NPDQQQFEFQ HFPTSYLRLA AHRVALHYGL QTMVQDNSVD GLANRIVVMK
101: TAESRCPAIC LSEIPAKQSE NEKPEHIKIA IRRRPNKTSL NETNETGIKR SSVRTVEERK EEYDKARARI FSTPASPDSD DTLPQAPADG KNLCLNGDEN
201: EGCRNSMADP EKNISIRDSG TSSRVAIFRD REKDRTDPDY DRSYERYVRN LPTNQSFSLA PFDAQKIQHP FLQYDTGFPQ LGQIQRTQAS LSYRPSNPIM
301: NPFCAMGLNQ TSRDAVYLQW PSHSMMYAHS YEQFRHAVFQ APFCQQPLSF DYSQNH

Best Arabidopsis Sequence Match ( AT3G56680.1 )
(BLAST)

001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR

Arabidopsis Description

AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.