Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G56680.1 | Thale cress | nucleus | 60.68 | 60.34 |
| PGSC0003DMT400038962 | Potato | nucleus | 19.37 | 57.63 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 51.57 | 50.84 |
| KRH66702 | Soybean | nucleus | 50.71 | 50.0 |
| KRG95052 | Soybean | nucleus | 50.14 | 49.58 |
| KRH71688 | Soybean | nucleus | 49.57 | 49.01 |
| KRH33128 | Soybean | nucleus | 48.43 | 48.3 |
| KRH33305 | Soybean | nucleus | 26.5 | 47.69 |
| Solyc10g078300.1.1 | Tomato | nucleus | 46.44 | 47.66 |
| AT5G05100.1 | Thale cress | nucleus | 43.87 | 47.53 |
| PGSC0003DMT400018543 | Potato | nucleus | 45.58 | 46.78 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 43.59 | 45.13 |
| AT3G10770.1 | Thale cress | nucleus | 41.88 | 44.14 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 41.31 | 41.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.17 | 41.11 |
| Os05t0411600-01 | Rice | cytosol | 38.18 | 40.0 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 39.32 | 39.77 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 39.6 | 39.71 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 39.03 | 39.48 |
| KXG21997 | Sorghum | nucleus | 37.89 | 37.78 |
| Zm00001d010282_P001 | Maize | plastid | 36.75 | 37.39 |
| Zm00001d038190_P012 | Maize | nucleus | 36.18 | 36.08 |
| HORVU1Hr1G063590.1 | Barley | plastid | 33.62 | 32.51 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | EntrezGene:818696 | ProteinID:AAB86456.2 | ProteinID:AAM14924.1 | ProteinID:AEC09907.1 |
| ProteinID:ANM61538.1 | ArrayExpress:AT2G40960 | EnsemblPlantsGene:AT2G40960 | RefSeq:AT2G40960 | TAIR:AT2G40960 | RefSeq:AT2G40960-TAIR-G |
| EnsemblPlants:AT2G40960.1 | TAIR:AT2G40960.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008150 |
| InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | RefSeq:NP_001323751.1 | RefSeq:NP_565947.1 | UniProt:O22209 |
| PFAM:PF01424 | PFAM:PF12752 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | InterPro:R3H_dom |
| InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI00000A2627 | : |
Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
Coordinates
chr2:+:17095165..17097454
Molecular Weight (calculated)
39837.7 Da
IEP (calculated)
7.589
GRAVY (calculated)
-0.705
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.