Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | KRH00851 | AT1G01510.1 | 21798944 |
| AT3G56680.1 | KRH40381 | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66702 | Soybean | nucleus | 93.85 | 51.4 |
| KRG95052 | Soybean | nucleus | 89.23 | 49.01 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 20.0 | 44.32 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 19.49 | 43.18 |
| KRH33128 | Soybean | nucleus | 67.69 | 37.5 |
| KRH71688 | Soybean | nucleus | 68.21 | 37.46 |
| PGSC0003DMT400038962 | Potato | nucleus | 22.56 | 37.29 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 60.0 | 32.87 |
| Solyc10g078300.1.1 | Tomato | nucleus | 55.9 | 31.87 |
| PGSC0003DMT400018543 | Potato | nucleus | 55.9 | 31.87 |
| CDY36274 | Canola | nucleus | 49.23 | 30.09 |
| CDX73904 | Canola | nucleus | 48.21 | 29.75 |
| CDY00700 | Canola | nucleus | 48.21 | 29.65 |
| AT3G10770.1 | Thale cress | nucleus | 50.26 | 29.43 |
| AT5G05100.1 | Thale cress | nucleus | 48.72 | 29.32 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 50.77 | 29.2 |
| CDY52134 | Canola | nucleus | 47.69 | 29.15 |
| CDY00970 | Canola | nucleus | 50.26 | 28.99 |
| Bra005838.1-P | Field mustard | nucleus | 47.18 | 28.93 |
| Bra001379.1-P | Field mustard | nucleus | 46.15 | 28.48 |
| CDY08578 | Canola | nucleus | 49.74 | 28.28 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 48.72 | 27.3 |
| AT3G56680.1 | Thale cress | nucleus | 49.23 | 27.2 |
| Bra034145.1-P | Field mustard | nucleus | 48.72 | 27.07 |
| AT2G40960.1 | Thale cress | nucleus | 47.69 | 26.5 |
| CDX80941 | Canola | nucleus | 47.69 | 26.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.72 | 26.39 |
| Bra029867.1-P | Field mustard | nucleus | 48.21 | 25.54 |
| CDY61685 | Canola | nucleus | 44.1 | 25.22 |
| Os05t0411600-01 | Rice | cytosol | 43.08 | 25.07 |
| CDX76005 | Canola | nucleus | 43.08 | 24.85 |
| Bra014678.1-P | Field mustard | nucleus | 43.08 | 24.85 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 42.05 | 23.63 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 42.05 | 23.63 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 42.05 | 23.43 |
| Zm00001d010282_P001 | Maize | plastid | 38.97 | 22.03 |
| Zm00001d038190_P012 | Maize | nucleus | 39.49 | 21.88 |
| KXG21997 | Sorghum | nucleus | 39.49 | 21.88 |
| HORVU1Hr1G063590.1 | Barley | plastid | 36.92 | 19.83 |
| KRG92033 | Soybean | nucleus | 41.03 | 17.32 |
| KRH34752 | Soybean | nucleus | 40.51 | 17.14 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | EMBL:ACUP02006456 | EnsemblPlantsGene:GLYMA_10G114500 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | UniProt:K7LIC6 | EnsemblPlants:KRH33305 |
| ProteinID:KRH33305 | ProteinID:KRH33305.1 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51673 | PANTHER:PTHR15672 |
| PANTHER:PTHR15672:SF15 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI0002948F00 |
Description
hypothetical protein
Coordinates
chr10:-:28601982..28602599
Molecular Weight (calculated)
22425.0 Da
IEP (calculated)
7.620
GRAVY (calculated)
-1.094
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDIQMFLN NADQQHFEFQ HFPSSYLQLV AHRVAQHYNM QKMVQDNALD GQGSKILVWK LPETKYPVLE NDKSEQKKFV IRPRPNRNSL NDANGVGTKG
101: NPVRSVEERK EEYDRARACI FSSPRSSESG DTSSMVPMDG RNSSTSKDEN ETSKNPMADS KRYISVRDSC STRVAIVRDR EKDHSDPDYD RSYGR
101: NPVRSVEERK EEYDRARACI FSSPRSSESG DTSSMVPMDG RNSSTSKDEN ETSKNPMADS KRYISVRDSC STRVAIVRDR EKDHSDPDYD RSYGR
001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.