Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | KRH00851 | AT1G01510.1 | 21798944 |
| AT3G56680.1 | KRH40381 | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH71688 | Soybean | nucleus | 88.64 | 87.89 |
| KRG95052 | Soybean | nucleus | 74.72 | 74.08 |
| KRH66702 | Soybean | nucleus | 73.01 | 72.19 |
| KRH33305 | Soybean | nucleus | 37.5 | 67.69 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 63.64 | 62.92 |
| PGSC0003DMT400038962 | Potato | nucleus | 19.89 | 59.32 |
| Solyc10g078300.1.1 | Tomato | nucleus | 51.42 | 52.92 |
| PGSC0003DMT400018543 | Potato | nucleus | 51.14 | 52.63 |
| CDX76005 | Canola | nucleus | 48.3 | 50.3 |
| Bra014678.1-P | Field mustard | nucleus | 48.01 | 50.0 |
| AT3G56680.1 | Thale cress | nucleus | 49.72 | 49.58 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 47.44 | 49.26 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 12.22 | 48.86 |
| AT5G05100.1 | Thale cress | nucleus | 44.6 | 48.46 |
| AT2G40960.1 | Thale cress | nucleus | 48.3 | 48.43 |
| CDY61685 | Canola | nucleus | 46.59 | 48.09 |
| CDY52134 | Canola | nucleus | 43.18 | 47.65 |
| CDY00700 | Canola | nucleus | 42.9 | 47.63 |
| Bra005838.1-P | Field mustard | nucleus | 42.61 | 47.17 |
| CDX73904 | Canola | nucleus | 42.33 | 47.15 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.65 | 46.59 |
| CDY36274 | Canola | nucleus | 41.76 | 46.08 |
| Bra001379.1-P | Field mustard | nucleus | 40.91 | 45.57 |
| CDY00970 | Canola | nucleus | 43.47 | 45.27 |
| CDY08578 | Canola | nucleus | 44.03 | 45.19 |
| AT3G10770.1 | Thale cress | nucleus | 42.61 | 45.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.45 | 44.44 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 42.9 | 43.39 |
| CDX80941 | Canola | nucleus | 42.9 | 42.9 |
| Os05t0411600-01 | Rice | cytosol | 40.34 | 42.39 |
| Bra034145.1-P | Field mustard | nucleus | 41.19 | 41.31 |
| Bra029867.1-P | Field mustard | nucleus | 43.18 | 41.3 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 39.77 | 40.35 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 39.77 | 40.0 |
| KXG21997 | Sorghum | nucleus | 39.77 | 39.77 |
| Zm00001d038190_P012 | Maize | nucleus | 39.49 | 39.49 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 38.92 | 39.48 |
| Zm00001d010282_P001 | Maize | plastid | 38.64 | 39.42 |
| HORVU1Hr1G063590.1 | Barley | plastid | 34.94 | 33.88 |
| KRG92033 | Soybean | nucleus | 36.08 | 27.49 |
| KRH34752 | Soybean | nucleus | 35.51 | 27.11 |
Protein Annotations
| EntrezGene:100799336 | Gene3D:3.30.1370.50 | MapMan:35.2 | EMBL:ACUP02006363 | EnsemblPlantsGene:GLYMA_10G102000 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | UniProt:I1LA89 | InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 |
| EnsemblPlants:KRH33128 | ProteinID:KRH33128 | ProteinID:KRH33128.1 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51061 |
| PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 |
| SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI000233C1E7 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:-:20010281..20015409
Molecular Weight (calculated)
40282.1 Da
IEP (calculated)
6.879
GRAVY (calculated)
-0.770
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSCVPNGD VSGFKDKEPM VDPFLVEALQ NPRHRVTILR MELDIQRFLN NADQQHFEFQ HFPSSYLRLA AHRVAQHYGM QTMVQDNGFN GQGTRIMVRK
101: IAESRYPVVC LSEIPAKQLE DDKPEQIKIA IRPRQNKNSL NEAGRKSNPL RSVEERKEEY DRARARIFSS SRSCDSDDTL SQTFTDEKNS LIIKDENETS
201: KTPVVDSEQC TVGRDISSTR VAILRDREKD RSDPDYDRNY GRYARSIPIS SLNLMPFNLQ QVQPPFVQYD NAFNPFSQIS QNQASLGYGP PPSPMMNPFG
301: VTGSNQVSRD GAYVQWPSAA MMYAHSYDQF RHAVFQAPIA QRPLSFDYSQ NY
101: IAESRYPVVC LSEIPAKQLE DDKPEQIKIA IRPRQNKNSL NEAGRKSNPL RSVEERKEEY DRARARIFSS SRSCDSDDTL SQTFTDEKNS LIIKDENETS
201: KTPVVDSEQC TVGRDISSTR VAILRDREKD RSDPDYDRNY GRYARSIPIS SLNLMPFNLQ QVQPPFVQYD NAFNPFSQIS QNQASLGYGP PPSPMMNPFG
301: VTGSNQVSRD GAYVQWPSAA MMYAHSYDQF RHAVFQAPIA QRPLSFDYSQ NY
001: MAAMSDKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ SPEQQQYEFQ PLPTSYLRLI AHRVAQHYGL FTTALEGGGV DGSGNRILAT KTVESRYPYV
101: CLSEIPVKQP EIHGRPEGFK IAIKPRPNRG AGGSGSGSGV EKNLLRSVEE RKEEYDKARA RIFNSPSSSD SEDSSTRAPP PPYPRLDSKH NTACPSRNET
201: EVVVNYNSNP VDVERNGVIR DSGRTSRVAI IRDREKDRYD PDYDRNRYVR VAPPVQNFNP IPIPLPFHDA IFPQMPRTQA SLNYGHPLNP AMTAPSYTEW
301: PSATMTYAQT LNASDVHHFR HPNP
101: CLSEIPVKQP EIHGRPEGFK IAIKPRPNRG AGGSGSGSGV EKNLLRSVEE RKEEYDKARA RIFNSPSSSD SEDSSTRAPP PPYPRLDSKH NTACPSRNET
201: EVVVNYNSNP VDVERNGVIR DSGRTSRVAI IRDREKDRYD PDYDRNRYVR VAPPVQNFNP IPIPLPFHDA IFPQMPRTQA SLNYGHPLNP AMTAPSYTEW
301: PSATMTYAQT LNASDVHHFR HPNP
Arabidopsis Description
Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q93YN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.