Factsheet for Bra029867.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08578	Canola	nucleus	86.14	92.42
AT3G10770.1	Thale cress	nucleus	76.36	84.38
Bra001379.1-P	Field mustard	nucleus	65.22	75.95
Bra034145.1-P	Field mustard	nucleus	69.02	72.36
Bra005838.1-P	Field mustard	nucleus	55.16	63.84
PGSC0003DMT400038962	Potato	nucleus	18.48	57.63
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.77	53.41
KRH33305	Soybean	nucleus	25.54	48.21
VIT_08s0040g00890.t01	Wine grape	nucleus	45.65	47.19
KRH66702	Soybean	nucleus	43.75	45.22
KRG95052	Soybean	nucleus	43.21	44.79
KRH33128	Soybean	nucleus	41.3	43.18
KRH71688	Soybean	nucleus	41.3	42.82
GSMUA_Achr7P21160_001	Banana	nucleus	38.59	41.89
Solyc10g078300.1.1	Tomato	nucleus	38.59	41.52
Bra014678.1-P	Field mustard	nucleus	38.04	41.42
PGSC0003DMT400018543	Potato	nucleus	38.32	41.23
Os05t0411600-01	Rice	cytosol	36.14	39.7
GSMUA_Achr1P04410_001	Banana	nucleus	37.5	39.66
GSMUA_AchrUn_...	Banana	nucleus	37.77	38.61
TraesCS1D01G257500.2	Wheat	nucleus	35.87	38.04
TraesCS1A01G258200.1	Wheat	nucleus	35.6	37.75
Zm00001d010282_P001	Maize	plastid	35.33	37.68
TraesCS1B01G268700.1	Wheat	nucleus	35.33	37.14
KXG21997	Sorghum	nucleus	35.33	36.93
Zm00001d038190_P012	Maize	nucleus	35.33	36.93
HORVU1Hr1G063590.1	Barley	plastid	31.25	31.68

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	EnsemblPlantsGene:Bra029867	EnsemblPlants:Bra029867.1	EnsemblPlants:Bra029867.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867
UniProt:M4EM47	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF15	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
UniParc:UPI0002547852	SEG:seg	:	:	:	:

Description

AT3G10770 (E=4e-125) | nucleic acid binding

Coordinates

chrA05:+:21929929..21931591

Molecular Weight (calculated)

40810.9 Da

IEP (calculated)

8.224

GRAVY (calculated)

-0.634

Length

368 amino acids

Sequence
(BLAST)

001: MAAAAAAAMT EKEAMVDPFL VEALQNPRHR LTILRMELDI QKFFQNPEQL QFEFSPFPTS YLRLAAHRVA QHYGLVTMAL DNGGGSVDGS DNRILVAKTA
101: ESRFPHVCLS EIPVKQHENG RPEGGFKIAI KERPKRGSGS GGSGSGVQQN LQRSVEERKE EYDKARARIF NSPGSSDSED SSSLRAPPPP PPEVKNTSVN
201: RNEAEVAVSN NSLDAGGSRE SGRTSVAIIR DREKDRYDPD YDRSYDRYVV DPAYRYVRVM PSGQSFNPMP MHIPFHDGGF PQMPRGHQAN LNYGHPFNPA
301: MSPFISNPAA YTPWPNSPAM NYAHSLNGPD TNLFRLPRLT KLLLFDLSLV SVAYSSSFYC RHPSASNP

Best Arabidopsis Sequence Match ( AT3G10770.1 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.