Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00970 | Canola | nucleus | 85.59 | 84.32 |
| CDY08578 | Canola | nucleus | 82.28 | 79.88 |
| Bra029867.1-P | Field mustard | nucleus | 84.38 | 76.36 |
| AT5G05100.1 | Thale cress | nucleus | 64.26 | 66.05 |
| PGSC0003DMT400038962 | Potato | nucleus | 21.32 | 60.17 |
| KRH33305 | Soybean | nucleus | 29.43 | 50.26 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 48.05 | 44.94 |
| KRG95052 | Soybean | nucleus | 46.85 | 43.94 |
| KRH66702 | Soybean | nucleus | 46.85 | 43.82 |
| KRH33128 | Soybean | nucleus | 45.05 | 42.61 |
| Solyc10g078300.1.1 | Tomato | nucleus | 43.24 | 42.11 |
| KRH71688 | Soybean | nucleus | 44.74 | 41.97 |
| AT2G40960.1 | Thale cress | nucleus | 44.14 | 41.88 |
| PGSC0003DMT400018543 | Potato | nucleus | 42.64 | 41.52 |
| AT3G56680.1 | Thale cress | nucleus | 43.54 | 41.08 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 40.54 | 39.82 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 41.44 | 39.66 |
| Os05t0411600-01 | Rice | cytosol | 38.14 | 37.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.64 | 36.67 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 38.14 | 36.6 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 37.84 | 36.31 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 37.84 | 36.0 |
| Zm00001d010282_P001 | Maize | plastid | 37.24 | 35.94 |
| KXG21997 | Sorghum | nucleus | 37.84 | 35.8 |
| Zm00001d038190_P012 | Maize | nucleus | 37.84 | 35.8 |
| HORVU1Hr1G063590.1 | Barley | plastid | 33.03 | 30.3 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | EntrezGene:820246 | ProteinID:AAF19572.1 | ProteinID:AEE74952.1 | ProteinID:AEE74953.1 |
| EMBL:AK226352 | ArrayExpress:AT3G10770 | EnsemblPlantsGene:AT3G10770 | RefSeq:AT3G10770 | TAIR:AT3G10770 | RefSeq:AT3G10770-TAIR-G |
| EnsemblPlants:AT3G10770.1 | TAIR:AT3G10770.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008150 | InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | RefSeq:NP_566381.1 | RefSeq:NP_850556.1 |
| PFAM:PF01424 | PFAM:PF12752 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | UniProt:Q9SG83 | InterPro:R3H_dom |
| InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI000009D52F | SEG:seg |
Description
Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
Coordinates
chr3:-:3372092..3374313
Molecular Weight (calculated)
37536.0 Da
IEP (calculated)
8.085
GRAVY (calculated)
-0.717
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.