Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | KRH00851 | AT1G01510.1 | 21798944 |
| AT3G56680.1 | KRH40381 | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33305 | Soybean | nucleus | 51.4 | 93.85 |
| KRG95052 | Soybean | nucleus | 92.13 | 92.39 |
| KRH71688 | Soybean | nucleus | 73.03 | 73.24 |
| KRH33128 | Soybean | nucleus | 72.19 | 73.01 |
| PGSC0003DMT400038962 | Potato | nucleus | 21.63 | 65.25 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 63.76 | 63.76 |
| Solyc10g078300.1.1 | Tomato | nucleus | 55.62 | 57.89 |
| PGSC0003DMT400018543 | Potato | nucleus | 55.34 | 57.6 |
| AT3G56680.1 | Thale cress | nucleus | 51.12 | 51.56 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 12.64 | 51.14 |
| AT2G40960.1 | Thale cress | nucleus | 50.0 | 50.71 |
| AT5G05100.1 | Thale cress | nucleus | 45.51 | 50.0 |
| CDY36274 | Canola | nucleus | 44.1 | 49.22 |
| CDY52134 | Canola | nucleus | 44.1 | 49.22 |
| CDY00700 | Canola | nucleus | 43.54 | 48.9 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 12.08 | 48.86 |
| CDX73904 | Canola | nucleus | 43.26 | 48.73 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 46.35 | 48.67 |
| CDX76005 | Canola | nucleus | 46.07 | 48.52 |
| Bra014678.1-P | Field mustard | nucleus | 46.07 | 48.52 |
| Bra005838.1-P | Field mustard | nucleus | 43.26 | 48.43 |
| CDY61685 | Canola | nucleus | 46.07 | 48.09 |
| CDY00970 | Canola | nucleus | 45.51 | 47.93 |
| CDY08578 | Canola | nucleus | 46.07 | 47.81 |
| AT3G10770.1 | Thale cress | nucleus | 43.82 | 46.85 |
| Bra001379.1-P | Field mustard | nucleus | 41.57 | 46.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.35 | 45.83 |
| Bra034145.1-P | Field mustard | nucleus | 44.1 | 44.73 |
| Os05t0411600-01 | Rice | cytosol | 41.85 | 44.48 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 42.98 | 43.97 |
| Bra029867.1-P | Field mustard | nucleus | 45.22 | 43.75 |
| CDX80941 | Canola | nucleus | 42.98 | 43.47 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 41.01 | 42.07 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 41.29 | 42.0 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 40.17 | 41.21 |
| KXG21997 | Sorghum | nucleus | 39.61 | 40.06 |
| Zm00001d038190_P012 | Maize | nucleus | 39.04 | 39.49 |
| Zm00001d010282_P001 | Maize | plastid | 38.2 | 39.42 |
| HORVU1Hr1G063590.1 | Barley | plastid | 37.64 | 36.91 |
| KRG92033 | Soybean | nucleus | 38.2 | 29.44 |
| KRH34752 | Soybean | nucleus | 37.36 | 28.85 |
Protein Annotations
| EntrezGene:100814835 | Gene3D:3.30.1370.50 | MapMan:35.2 | EMBL:ACUP02002006 | EnsemblPlantsGene:GLYMA_03G123300 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | UniProt:I1JN16 | InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 |
| EnsemblPlants:KRH66702 | ProteinID:KRH66702 | ProteinID:KRH66702.1 | ProteinID:KRH66703.1 | PFAM:PF01424 | PFAM:PF12752 |
| PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | InterPro:R3H_dom | InterPro:R3H_dom_sf |
| SMART:SM00393 | SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI00023C1764 | : | : |
Description
hypothetical protein
Coordinates
chr3:+:33625665..33629748
Molecular Weight (calculated)
40269.0 Da
IEP (calculated)
8.182
GRAVY (calculated)
-0.787
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLCLSNDS VVSGFKDKES MVDPFLVEAL QNPRHRLTIL RMELDIQKFL NNADQQHFEF QHFPSSYLRL AAHRVAQHYN MQTMVQDNGL DGQGSKILVR
101: KLPESKYPVV RLSEIPAKQL ENDKSELKKF VIRPRPNRNS LNDANGVGTK GNPVRSVEER KEEYDRARAR IFSSPRSSES GDTSSMVPMD GRNSSTSKDE
201: NETSKNPMAD SERYISVRDS CSTRVAILRD REKDRSDPDY DRSYGRYARS IPASAVNLVP FNLQKAQPSF AQYDATFNQL GQMSQTQASL GYAPPSTPIM
301: SPFGTPGLNQ TSSEGAYLQW PSAAMMYAHS YDQFRHGVFQ APFGQQPLSF DYSQNY
101: KLPESKYPVV RLSEIPAKQL ENDKSELKKF VIRPRPNRNS LNDANGVGTK GNPVRSVEER KEEYDRARAR IFSSPRSSES GDTSSMVPMD GRNSSTSKDE
201: NETSKNPMAD SERYISVRDS CSTRVAILRD REKDRSDPDY DRSYGRYARS IPASAVNLVP FNLQKAQPSF AQYDATFNQL GQMSQTQASL GYAPPSTPIM
301: SPFGTPGLNQ TSSEGAYLQW PSAAMMYAHS YDQFRHGVFQ APFGQQPLSF DYSQNY
001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
Arabidopsis Description
AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.