Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | CDX90032 | AT1G01440.1 | 21798944 |
| AT3G56680.1 | CDY15177 | AT1G01440.1 | 21798944 |
| AT3G56680.1 | CDX90038 | AT1G01510.1 | 21798944 |
| AT3G56680.1 | CDY15172 | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76005 | Canola | nucleus | 82.99 | 83.73 |
| AT3G56680.1 | Thale cress | nucleus | 68.33 | 66.01 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 17.01 | 65.91 |
| PGSC0003DMT400038962 | Potato | nucleus | 19.94 | 57.63 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 52.79 | 50.56 |
| Solyc10g078300.1.1 | Tomato | nucleus | 48.09 | 47.95 |
| PGSC0003DMT400018543 | Potato | nucleus | 47.51 | 47.37 |
| KRH71688 | Soybean | nucleus | 48.97 | 47.04 |
| KRH33128 | Soybean | nucleus | 48.09 | 46.59 |
| KRG95052 | Soybean | nucleus | 48.09 | 46.2 |
| KRH66702 | Soybean | nucleus | 48.09 | 46.07 |
| CDY52134 | Canola | nucleus | 41.94 | 44.83 |
| CDY00700 | Canola | nucleus | 41.06 | 44.16 |
| KRH33305 | Soybean | nucleus | 25.22 | 44.1 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 43.7 | 43.95 |
| CDX73904 | Canola | nucleus | 39.88 | 43.04 |
| CDY36274 | Canola | nucleus | 39.59 | 42.32 |
| CDY08578 | Canola | nucleus | 42.52 | 42.27 |
| CDY00970 | Canola | nucleus | 41.35 | 41.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.11 | 40.83 |
| Os05t0411600-01 | Rice | cytosol | 39.59 | 40.3 |
| CDX80941 | Canola | nucleus | 41.35 | 40.06 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 40.76 | 39.94 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 38.42 | 37.75 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 37.83 | 37.18 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 38.12 | 37.14 |
| Zm00001d038190_P012 | Maize | nucleus | 37.83 | 36.65 |
| Zm00001d010282_P001 | Maize | plastid | 36.36 | 35.94 |
| KXG21997 | Sorghum | nucleus | 36.66 | 35.51 |
| HORVU1Hr1G063590.1 | Barley | plastid | 32.55 | 30.58 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | GO:A0A078JBA5 | UniProt:A0A078JBA5 | EnsemblPlants:CDY61685 | ProteinID:CDY61685 |
| ProteinID:CDY61685.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00034224001 | InterPro:IPR001374 |
| InterPro:IPR024771 | InterPro:IPR036867 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51061 | PFscan:PS51673 |
| PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 |
| InterPro:SUZ | UniParc:UPI0004EC1475 | SEG:seg | : | : | : |
Description
BnaCnng38270DBnaCnng38270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBA5]
Coordinates
chrLK034026:-:22295..24316
Molecular Weight (calculated)
38755.6 Da
IEP (calculated)
7.763
GRAVY (calculated)
-0.729
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSFTTPPP ETAAVVMGEN GFTVDPFLVE ALQNPRHRLT ILRMELDVQR FLQSQEQQQF EFQRFPTSYL RLAAHRVANH YGLATSVQDG GVDGNENIIL
101: VTKTSASKFP TVKLSDIPAA KQSQNGKFEH MKVSIKTRPS KGSGFEGGEV EKKRGPLRSV EERKEDYDRA RARIFNGLTG FSGDESDTQV YERNPSLGKD
201: DSPTPTKNLS LRETGPASRV AILRDSEKDR FDPDYDRNYK RYIRSLPVYQ NFNVPPFNMM QQPYYQMGFT EYNHIPNASL NFGPPGNAIM SPYGTTVVHP
301: GDAMYMQVPM MYAHSYEQLR NASLQAQFCQ QPLSFEYMQN R
101: VTKTSASKFP TVKLSDIPAA KQSQNGKFEH MKVSIKTRPS KGSGFEGGEV EKKRGPLRSV EERKEDYDRA RARIFNGLTG FSGDESDTQV YERNPSLGKD
201: DSPTPTKNLS LRETGPASRV AILRDSEKDR FDPDYDRNYK RYIRSLPVYQ NFNVPPFNMM QQPYYQMGFT EYNHIPNASL NFGPPGNAIM SPYGTTVVHP
301: GDAMYMQVPM MYAHSYEQLR NASLQAQFCQ QPLSFEYMQN R
001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
Arabidopsis Description
AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.