Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033264.1-P | Field mustard | nucleus | 78.75 | 75.9 |
| CDY15177 | Canola | nucleus | 66.96 | 67.33 |
| CDX79176 | Canola | cytosol | 10.36 | 51.33 |
| CDX91876 | Canola | nucleus | 49.46 | 47.43 |
| AT1G01440.1 | Thale cress | nucleus | 54.64 | 46.08 |
| CDY67475 | Canola | nucleus | 48.39 | 45.85 |
| CDY48504 | Canola | nucleus | 42.14 | 41.92 |
| CDY07174 | Canola | nucleus | 43.75 | 38.52 |
| CDX80013 | Canola | nucleus | 30.89 | 26.02 |
| CDY42041 | Canola | cytosol | 29.82 | 25.85 |
| CDX71720 | Canola | cytosol | 31.61 | 23.92 |
| CDY11374 | Canola | cytosol | 31.43 | 23.75 |
| CDY11373 | Canola | cytosol | 30.18 | 23.06 |
| GSMUA_Achr10P... | Banana | nucleus | 30.18 | 22.5 |
| GSMUA_Achr3P25070_001 | Banana | vacuole | 27.14 | 21.97 |
| GSMUA_Achr7P14150_001 | Banana | nucleus | 29.64 | 21.9 |
| GSMUA_Achr10P... | Banana | nucleus | 30.54 | 21.81 |
| GSMUA_Achr10P... | Banana | cytosol | 29.46 | 21.26 |
| TraesCS1B01G459600.2 | Wheat | plastid | 28.04 | 19.97 |
| TraesCS1D01G434200.2 | Wheat | nucleus | 27.68 | 19.82 |
| Zm00001d053382_P002 | Maize | nucleus | 29.11 | 19.76 |
| Os05t0586400-01 | Rice | nucleus | 27.32 | 19.62 |
| Os01t0621300-01 | Rice | nucleus | 28.21 | 19.58 |
| TraesCS1A01G425200.2 | Wheat | nucleus | 27.5 | 19.57 |
| KXG22639 | Sorghum | nucleus | 27.5 | 19.44 |
| TraesCS7B01G276600.1 | Wheat | nucleus | 28.75 | 19.44 |
| Os02t0258300-01 | Rice | nucleus | 29.11 | 19.36 |
| HORVU3Hr1G055550.3 | Barley | nucleus | 27.14 | 19.17 |
| HORVU0Hr1G021800.1 | Barley | nucleus | 27.68 | 19.02 |
| TraesCS7D01G371500.1 | Wheat | nucleus | 28.04 | 18.98 |
| TraesCS7A01G351500.1 | Wheat | nucleus | 27.86 | 18.95 |
| TraesCS3D01G229400.1 | Wheat | nucleus | 26.96 | 18.95 |
| Zm00001d044191_P004 | Maize | nucleus | 26.79 | 18.89 |
| TraesCS3B01G253700.2 | Wheat | nucleus | 26.79 | 18.84 |
| EES03295 | Sorghum | nucleus | 26.79 | 18.8 |
| Os06t0524300-01 | Rice | nucleus | 27.14 | 18.74 |
| Zm00001d011373_P002 | Maize | nucleus | 27.14 | 18.74 |
| TraesCS7A01G336000.1 | Wheat | nucleus | 28.39 | 18.64 |
| TraesCS7D01G343700.1 | Wheat | cytosol | 28.21 | 18.61 |
| TraesCS7B01G247600.1 | Wheat | cytosol | 27.86 | 18.55 |
| Zm00001d016081_P002 | Maize | nucleus | 28.21 | 18.54 |
| EER88427 | Sorghum | nucleus | 26.25 | 18.47 |
| Zm00001d046072_P001 | Maize | cytosol | 26.61 | 18.46 |
| KXG29961 | Sorghum | nucleus | 28.39 | 18.4 |
| Zm00001d009716_P001 | Maize | nucleus | 25.0 | 18.32 |
| HORVU1Hr1G092980.14 | Barley | plastid | 27.68 | 17.67 |
| TraesCS3A01G224200.2 | Wheat | nucleus | 26.07 | 17.51 |
| HORVU7Hr1G082720.10 | Barley | cytosol, nucleus | 25.89 | 16.98 |
Protein Annotations
| EnsemblPlants:CDX90032 | EnsemblPlantsGene:GSBRNA2T00150533001 | InterPro:Zinc_ribbon_12 | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF3 | PFAM:PF11331 |
| ProteinID:CDX90032 | ProteinID:CDX90032.1 | SEG:seg | UniParc:UPI0004EED8A4 | MapMan:35.2 | : |
Description
BnaA10g00500D
Coordinates
chrLK031861:-:1337646..1339932
Molecular Weight (calculated)
62594.6 Da
IEP (calculated)
7.133
GRAVY (calculated)
-0.888
Length
560 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTSGSTSSR SQEETRFKEE DDASPRRNRQ DQNTIPIQYA DQQQAELFRK LDSLKGHVLR GQDSPRASHH QPPPYYNPYP PYGMYPSPSN PPHGFPMHQS
101: LYDIGPDILD PQLHDPRFFP GTPSRYADVP VSHHGGGAQG HHHKRWPSDI NSEMGSGAQG HHHTRRPSEV NSEMGGGAYA RGYVQTAADS RRCHPLAGGA
201: PFVACHNCFE LLYLPRKKLL LSQAKQQQKL QCGACSEVFS FTIVDNKLVF SSSSALEESH RARVEVEDRS AVIDDCPLKD EEHSDDEGGR SSVSSEPQKE
301: VVKSVRRRAK AAKAPPPPPP PENSNLLELF EYSNVNRAAL TYGMSQLGYN KQVSFTKQES VASETDISYN GYYNNTEDDS RISNASKDER GRRNRKHRSD
401: YNKTVSNDDQ YDRQLEVWVN GHLIPEDQVI SAEKQAGPVQ AGNYWYDYRA GFWGVMGHPC LGIIPPFIEE FSRPMPDNCG AGNTGVFVNG RELHERDFEL
501: LSGRGLPRGK NRSYIVDISG RVLDGDSGEE LKSLGKLAPT IEKVKHGFGM RVPRYLASST
101: LYDIGPDILD PQLHDPRFFP GTPSRYADVP VSHHGGGAQG HHHKRWPSDI NSEMGSGAQG HHHTRRPSEV NSEMGGGAYA RGYVQTAADS RRCHPLAGGA
201: PFVACHNCFE LLYLPRKKLL LSQAKQQQKL QCGACSEVFS FTIVDNKLVF SSSSALEESH RARVEVEDRS AVIDDCPLKD EEHSDDEGGR SSVSSEPQKE
301: VVKSVRRRAK AAKAPPPPPP PENSNLLELF EYSNVNRAAL TYGMSQLGYN KQVSFTKQES VASETDISYN GYYNNTEDDS RISNASKDER GRRNRKHRSD
401: YNKTVSNDDQ YDRQLEVWVN GHLIPEDQVI SAEKQAGPVQ AGNYWYDYRA GFWGVMGHPC LGIIPPFIEE FSRPMPDNCG AGNTGVFVNG RELHERDFEL
501: LSGRGLPRGK NRSYIVDISG RVLDGDSGEE LKSLGKLAPT IEKVKHGFGM RVPRYLASST
001: MRTSGDVYGA DTGSSRSDED RGFKEDLNES ATSPMRNRLD DSNSRPGSQR FVKSSRKEEE TDSDSSSSKN TTTRNNPIQY TDKQQAELLR KLDSIKDHLL
101: RGGGNNATVV DQPPMGFHAH HGPPPSYYNP YPEPFPYGMY PTASNQPHVP AYRDPYGFPV HRIPQNFYQG PSHYPNQMPP RPPYPQGQYV DIGSDILESQ
201: LQDPRFFPGT PSRYGDVPFS PALHHGEKVG PFSPHGGVHT RWPSEIDSEM GGAFARGYVQ QAVSDTDSRR CHPLAGGAPF IACHSCFELL YVPKKKLLGQ
301: ERQQKMQCGA CSEVITFRVV DKKLVFSSSA LGETTNRVSV EVEDRSSPIP VVDDYPLNDE EPRIHQETKI VHAVSPSDHS NDEDRSSISS EPRKQVVKSV
401: RSRAQGAKVP PPPPPEKSNL LELFEYSNVN RAAITYGMAQ LGYYKQESYT KQDSLKSESV ATETDVSYNE YYTNTEESED SRISKASKEG RRPRNRKQSS
501: EHSFAEVTNN ISSNDQNNEQ LEVWVNGYLI PEDLVISAEK QAGPVQAGKY WYDYRAGFWG VMGNPCLGII PPFIEEFSRP MPDNCGAGNT SVFVNGRELH
601: ERDLELLSSR GLPRGKNRSY IIDIAGRVLD GDSGEELKSL GRLAPTVDKV KHGFGMRVPR SLVS
101: RGGGNNATVV DQPPMGFHAH HGPPPSYYNP YPEPFPYGMY PTASNQPHVP AYRDPYGFPV HRIPQNFYQG PSHYPNQMPP RPPYPQGQYV DIGSDILESQ
201: LQDPRFFPGT PSRYGDVPFS PALHHGEKVG PFSPHGGVHT RWPSEIDSEM GGAFARGYVQ QAVSDTDSRR CHPLAGGAPF IACHSCFELL YVPKKKLLGQ
301: ERQQKMQCGA CSEVITFRVV DKKLVFSSSA LGETTNRVSV EVEDRSSPIP VVDDYPLNDE EPRIHQETKI VHAVSPSDHS NDEDRSSISS EPRKQVVKSV
401: RSRAQGAKVP PPPPPEKSNL LELFEYSNVN RAAITYGMAQ LGYYKQESYT KQDSLKSESV ATETDVSYNE YYTNTEESED SRISKASKEG RRPRNRKQSS
501: EHSFAEVTNN ISSNDQNNEQ LEVWVNGYLI PEDLVISAEK QAGPVQAGKY WYDYRAGFWG VMGNPCLGII PPFIEEFSRP MPDNCGAGNT SVFVNGRELH
601: ERDLELLSSR GLPRGKNRSY IIDIAGRVLD GDSGEELKSL GRLAPTVDKV KHGFGMRVPR SLVS
Arabidopsis Description
At1g01440 [Source:UniProtKB/TrEMBL;Acc:Q6NQ63]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.