Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037384.1-P | Field mustard | nucleus | 33.49 | 93.01 |
| CDY48504 | Canola | nucleus | 65.57 | 74.07 |
| CDX79176 | Canola | cytosol | 10.53 | 59.29 |
| CDX91876 | Canola | nucleus | 52.67 | 57.36 |
| CDY67475 | Canola | nucleus | 53.3 | 57.36 |
| AT4G01090.1 | Thale cress | nucleus | 54.87 | 48.88 |
| CDY15177 | Canola | nucleus | 39.78 | 45.42 |
| CDX90032 | Canola | nucleus | 38.52 | 43.75 |
| CDY42041 | Canola | cytosol | 26.89 | 26.47 |
| CDX80013 | Canola | nucleus | 27.2 | 26.02 |
| CDX71720 | Canola | cytosol | 28.77 | 24.73 |
| CDY11374 | Canola | cytosol | 28.77 | 24.7 |
| CDY11373 | Canola | cytosol | 26.89 | 23.33 |
| GSMUA_Achr10P... | Banana | nucleus | 27.52 | 23.3 |
| GSMUA_Achr7P14150_001 | Banana | nucleus | 27.52 | 23.09 |
| GSMUA_Achr3P25070_001 | Banana | vacuole | 25.0 | 22.98 |
| GSMUA_Achr10P... | Banana | cytosol | 27.67 | 22.68 |
| GSMUA_Achr10P... | Banana | nucleus | 27.83 | 22.58 |
| TraesCS3D01G229400.1 | Wheat | nucleus | 26.26 | 20.95 |
| Os01t0621300-01 | Rice | nucleus | 26.57 | 20.94 |
| TraesCS3B01G253700.2 | Wheat | nucleus | 25.94 | 20.73 |
| TraesCS1B01G459600.2 | Wheat | plastid | 25.47 | 20.61 |
| Zm00001d053382_P002 | Maize | nucleus | 26.73 | 20.61 |
| HORVU3Hr1G055550.3 | Barley | nucleus | 25.47 | 20.43 |
| Zm00001d016081_P002 | Maize | nucleus | 27.36 | 20.42 |
| Zm00001d044191_P004 | Maize | nucleus | 25.47 | 20.4 |
| KXG29961 | Sorghum | nucleus | 27.2 | 20.02 |
| KXG22639 | Sorghum | nucleus | 24.84 | 19.95 |
| TraesCS1D01G434200.2 | Wheat | nucleus | 24.53 | 19.95 |
| Os05t0586400-01 | Rice | nucleus | 24.37 | 19.87 |
| TraesCS7A01G351500.1 | Wheat | nucleus | 25.63 | 19.81 |
| EES03295 | Sorghum | nucleus | 24.84 | 19.8 |
| Os06t0524300-01 | Rice | nucleus | 25.16 | 19.73 |
| Os02t0258300-01 | Rice | nucleus | 26.1 | 19.71 |
| TraesCS7D01G371500.1 | Wheat | nucleus | 25.63 | 19.71 |
| TraesCS1A01G425200.2 | Wheat | nucleus | 24.37 | 19.7 |
| EER88427 | Sorghum | nucleus | 24.53 | 19.6 |
| Zm00001d011373_P002 | Maize | nucleus | 24.84 | 19.48 |
| Zm00001d046072_P001 | Maize | cytosol | 24.69 | 19.45 |
| TraesCS7B01G276600.1 | Wheat | nucleus | 25.16 | 19.32 |
| HORVU0Hr1G021800.1 | Barley | nucleus | 24.37 | 19.02 |
| TraesCS3A01G224200.2 | Wheat | nucleus | 24.84 | 18.94 |
| TraesCS7A01G336000.1 | Wheat | nucleus | 25.16 | 18.76 |
| TraesCS7D01G343700.1 | Wheat | cytosol | 25.0 | 18.73 |
| TraesCS7B01G247600.1 | Wheat | cytosol | 24.69 | 18.67 |
| Zm00001d009716_P001 | Maize | nucleus | 22.33 | 18.59 |
| HORVU1Hr1G092980.14 | Barley | plastid | 25.63 | 18.59 |
| HORVU7Hr1G082720.10 | Barley | cytosol, nucleus | 23.11 | 17.21 |
Protein Annotations
| EnsemblPlants:CDY07174 | EnsemblPlantsGene:GSBRNA2T00123532001 | InterPro:Zinc_ribbon_12 | ncoils:Coil | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF3 |
| PFAM:PF11331 | ProteinID:CDY07174 | ProteinID:CDY07174.1 | SEG:seg | UniParc:UPI0004EE8283 | MapMan:35.2 |
Description
BnaCnng01890D
Coordinates
chrLK031975:-:668281..671455
Molecular Weight (calculated)
70163.9 Da
IEP (calculated)
6.341
GRAVY (calculated)
-0.901
Length
636 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSRDDDAHE ADGSRSDAGS SRTDEEKHSR LGSQRSGKSQ DLSDPNYASD TSSKNTTTTN TIEYTEQERA ELLRRLDSIK DHLLRGGGSV VNENQQSLRP
101: SYYYQHPYPE PYPYPGPVHG YHQDPYRRPP PVPYPNQMAP PRPYPGTHYV DIGADIVDQG TYFPATPSRY SDMPPYSPVS SHQRLYNNSP SFPSSVTSSD
201: PRGGGGGGGY ARWPSDLDSE MGGGGAFPRG YVKKAVSVSD DARLCHPLAG GAPFIACHSC FELLCLPKRK LLAQERLHKL QCGACSEVIS FRIVEKKLVF
301: SSGNEGGATE SVYVEVEDRS TTNTVVAVEE QSSVDFSNSG SDFPRKDEEE EEPIRNHQNT TKSIRSESQL SDDVERLSIS SESLQQKEVK SVRRRAKGSK
401: ASQPAAAPEK LGYHKPDKQE FFTKQDSVKP ESLATETEVS YNGYSNTEIS EDSNGREDSN NSNNRPRSRK GSESGSTEVT TRSSTDDQGK LLEVWVNGHL
501: IPEERVSSAE KLAGPVQAGK YWYDYRAGFW GVMGKPCLGI IPPFIEEFSH HPMPDNCGAG NTEVKVNGRE LHKRDLELLA GRGLPRDKNR SYILDISGRI
601: LDGESGEELK SLGKLAPTVD KVKHGFGMRV PRSLAS
101: SYYYQHPYPE PYPYPGPVHG YHQDPYRRPP PVPYPNQMAP PRPYPGTHYV DIGADIVDQG TYFPATPSRY SDMPPYSPVS SHQRLYNNSP SFPSSVTSSD
201: PRGGGGGGGY ARWPSDLDSE MGGGGAFPRG YVKKAVSVSD DARLCHPLAG GAPFIACHSC FELLCLPKRK LLAQERLHKL QCGACSEVIS FRIVEKKLVF
301: SSGNEGGATE SVYVEVEDRS TTNTVVAVEE QSSVDFSNSG SDFPRKDEEE EEPIRNHQNT TKSIRSESQL SDDVERLSIS SESLQQKEVK SVRRRAKGSK
401: ASQPAAAPEK LGYHKPDKQE FFTKQDSVKP ESLATETEVS YNGYSNTEIS EDSNGREDSN NSNNRPRSRK GSESGSTEVT TRSSTDDQGK LLEVWVNGHL
501: IPEERVSSAE KLAGPVQAGK YWYDYRAGFW GVMGKPCLGI IPPFIEEFSH HPMPDNCGAG NTEVKVNGRE LHKRDLELLA GRGLPRDKNR SYILDISGRI
601: LDGESGEELK SLGKLAPTVD KVKHGFGMRV PRSLAS
001: MRSRGDVSEA EGTRSDAGSS RSEEETSLKE KHSNSRAGSQ RSGKSLRNDE PNYGSDSSSK NTSSSNNPIE YTEHERAELL RRLDSIKDHL LRGGGGGNNV
101: VDKPKEPDQN QPFLRPVHLH GHANHNPGPS YYHQYPEPIQ YPGPVHGMYP QAYQDPYGYQ RRPPPVPNPN WYPPGHYPNQ MARQYPGGQY VELGPDIVEP
201: HSYYPATPGR YGDLPPYSPV SSHHREEKLA TQYSDMPPYS PVSSHHRGEK LTTPYSPRVN NGSSFPSSMG TPGPRGGYAR WPSEHDSEMG GAFARGYVKK
301: AVSDTGVRRC HPLAGGAPFI ACHSCFELLY LPKKKLLSQE RLHKLQCGAC SEVISFTIVD RKLVFSSGNE ETKPVSLEVE DRNTTNTVVI EEEVSSVDFN
401: SSGRDIPRKD EEEPVQELRN HQDTITTQSV RSESQHSDDE ERSSNSSEQQ QKEVKSVRRR GKGSKAPEPA APDNASLLEL FEYSNVNRAA LAYGMAQLGY
501: EKPDKQKSFM TQDSLKPESV ATETEVSYNG YSNTEISEDS RYSNRKGSEY GSTEITTRSS TDQNEDQMKS LEVWVNGHLI PEDLVSSAEK LAGPIQAGKY
601: WYDYRAGFWG VMGKPCLGII PPFIEEFSHP MLDNCAAGNT DVFVNGRELH KRDFELLVGR GLPRDKNRSY IVDISGRILD QDSGEELHSL GKLAPTIEKV
701: KHGFGMRVPR SLAS
101: VDKPKEPDQN QPFLRPVHLH GHANHNPGPS YYHQYPEPIQ YPGPVHGMYP QAYQDPYGYQ RRPPPVPNPN WYPPGHYPNQ MARQYPGGQY VELGPDIVEP
201: HSYYPATPGR YGDLPPYSPV SSHHREEKLA TQYSDMPPYS PVSSHHRGEK LTTPYSPRVN NGSSFPSSMG TPGPRGGYAR WPSEHDSEMG GAFARGYVKK
301: AVSDTGVRRC HPLAGGAPFI ACHSCFELLY LPKKKLLSQE RLHKLQCGAC SEVISFTIVD RKLVFSSGNE ETKPVSLEVE DRNTTNTVVI EEEVSSVDFN
401: SSGRDIPRKD EEEPVQELRN HQDTITTQSV RSESQHSDDE ERSSNSSEQQ QKEVKSVRRR GKGSKAPEPA APDNASLLEL FEYSNVNRAA LAYGMAQLGY
501: EKPDKQKSFM TQDSLKPESV ATETEVSYNG YSNTEISEDS RYSNRKGSEY GSTEITTRSS TDQNEDQMKS LEVWVNGHLI PEDLVSSAEK LAGPIQAGKY
601: WYDYRAGFWG VMGKPCLGII PPFIEEFSHP MLDNCAAGNT DVFVNGRELH KRDFELLVGR GLPRDKNRSY IVDISGRILD QDSGEELHSL GKLAPTIEKV
701: KHGFGMRVPR SLAS
Arabidopsis Description
AT4G01090 protein [Source:UniProtKB/TrEMBL;Acc:Q9M155]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.