CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75900
CDX81221
CDX82382
CDX84515
CDX92112
CDX95888
CDY04768
CDY18715
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	CDY04768	AT1G22920.1	21798944
AT2G02950.1	CDY21400	AT1G22920.1	21798944
AT2G02950.1	CDY25761	AT1G22920.1	21798944
AT2G02950.1	CDX75900	AT2G18790.1	10348744
AT2G02950.1	CDX82382	AT2G18790.1	10348744
AT2G02950.1	CDX92112	AT2G18790.1	10348744
AT2G02950.1	CDX95888	AT2G18790.1	10348744
AT2G02950.1	CDX81221	AT5G64330.1	16777956
AT2G02950.1	CDX84515	AT5G64330.1	16777956
AT2G02950.1	CDY18715	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09346	Canola	plastid	93.7	93.25
CDY17423	Canola	plastid	63.44	62.38
CDY03026	Canola	plastid	58.35	61.48
CDY45189	Canola	plastid	60.53	60.53
AT2G02950.1	Thale cress	plastid	59.32	55.81
CDY60835	Canola	plastid	55.45	54.52
CDY49100	Canola	plastid	41.16	39.08
CDY39328	Canola	nucleus	38.01	37.65
CDX84038	Canola	cytosol	33.66	36.87
CDY19245	Canola	nucleus	11.14	28.75
CDY19246	Canola	nucleus	6.78	25.23
CDX96697	Canola	cytoskeleton, cytosol, nucleus	21.55	24.65
CDX83812	Canola	cytoskeleton, cytosol, nucleus	21.55	24.59
CDX83749	Canola	cytosol	13.08	23.58
KRH70717	Soybean	nucleus	28.09	23.53
KRH74851	Soybean	nucleus, plastid	28.09	23.53
VIT_01s0026g02330.t01	Wine grape	nucleus	29.06	22.99
KRG99090	Soybean	cytosol, nucleus, peroxisome	26.88	22.02
KRH45905	Soybean	nucleus	27.6	21.39
GSMUA_Achr10P...	Banana	nucleus	17.43	20.57
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	19.85	19.81
CDY26723	Canola	nucleus	1.45	7.06

Protein Annotations

EnsemblPlants:CDY62179	EnsemblPlantsGene:GSBRNA2T00036038001	PANTHER:PTHR33781	PANTHER:PTHR33781:SF4	ProteinID:CDY62179	ProteinID:CDY62179.1
SEG:seg	UniParc:UPI0004EE65F2	UniProt:A0A078JCZ1	MapMan:26.1.2.2.3	:	:

Description

BnaCnng39440DBnaCnng39440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCZ1]

Coordinates

chrLK034110:-:15158..16796

Molecular Weight (calculated)

45533.7 Da

IEP (calculated)

9.358

GRAVY (calculated)

-0.666

Length

413 amino acids

Sequence
(BLAST)

001: MVTLISSSAS TPKISFDFTK DNNYPSLNLP VSSSPSSSCL RIKEEAVVAT KTLMEPCKPL IINNNPIDDQ ELGDEKKVVK KAPEEPEIGV FGAEKYFSGD
101: MDSDQSSSVL SLTKPEVERF VVEMKQTEKK STGTASVCTE SSWNSQSLLL KNKLVNSCNG SLQDKKTNSG QIQKVNNNKK SFLSNLRCKC CSDVDDKISV
201: KRSSDHDISA STGSKVENQM SSAVNLNTEP IKIQKQEDLV QRKSPEVFGS PVNIEKKLTM PPWESRSEGS DSSSDLFEID NLTGKPKPFL TRQVSDYAPS
301: EVSIEWSVVT ESAAGFSVMS ECATSPVRRN RSSHIPRVPT KNAPQIRKTN SSSRSGGFLL SCKSYKSVMV SGDSDRRSSM NKNKTSPSYV PRFPMETTKP
401: KSFETRRKLT VKL

Best Arabidopsis Sequence Match ( AT2G02950.1 )
(BLAST)

001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ

Arabidopsis Description

PKS1Protein PHYTOCHROME KINASE SUBSTRATE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.