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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68181 cytosol
CDX69524
CDX74726
CDX75900
CDX77035 cytosol
CDX78827
CDX78988
CDX79871 cytosol
CDX80064 nucleus
CDX82382
CDX82758
CDX83349 nucleus
CDX85551
CDX85552
CDX85839 cytosol
CDX86314 cytosol, nucleus
CDX86636
CDX89827
CDX90991
CDX92112
CDX93424
CDX94002
CDX95888
CDX98668
CDY01177
CDY03026
CDY03233
CDY06455
CDY07801
CDY08822
CDY09346
CDY12145
CDY14538
CDY14829 cytosol
CDY15503
CDY17423
CDY18229
CDY20630
CDY20948
CDY26423
CDY31285
CDY31442
CDY31531
CDY33464
CDY33984
CDY34890
CDY35154
CDY35312 cytosol
CDY37975
CDY38546
CDY45189
CDY46427 nucleus
CDY47309
CDY47967 cytosol
CDY50423
CDY50604 cytosol
CDY50911 nucleus
CDY52540
CDY52767 nucleus
CDY53636
CDY53637
CDY54115
CDY54116
CDY54117
CDY54570
CDY58805
CDY60835
CDY61670
CDY62179
CDY62359
CDY64518 cytosol
CDY66046
CDY66254 nucleus
CDY68196
CDY68655 cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18790.1 CDX86636 AT1G04400.1 11089975
AT2G18790.1 CDX89827 AT1G04400.1 11089975
AT2G18790.1 CDY15503 AT1G04400.1 11089975
AT2G18790.1 CDY18229 AT1G04400.1 11089975
AT2G18790.1 CDX93424 AT1G10470.1 11691995
AT2G18790.1 CDY07801 AT1G10470.1 11691995
AT2G18790.1 CDY20630 AT1G10470.1 11691995
AT2G18790.1 CDY20948 AT1G10470.1 11691995
AT2G18790.1 CDY34890 AT1G10470.1 11691995
AT2G18790.1 CDY37975 AT1G10470.1 11691995
AT2G18790.1 CDY66046 AT1G10470.1 11691995
AT2G18790.1 CDY46427 AT1G26960.1 23964902
AT2G18790.1 CDY52767 AT1G26960.1 23964902
AT2G18790.1 CDY46427 AT1G26960.1 23964902
AT2G18790.1 CDY52767 AT1G26960.1 23964902
AT2G18790.1 CDX68181 AT1G74490.1 23964902
AT2G18790.1 CDX85839 AT1G74490.1 23964902
AT2G18790.1 CDY50604 AT1G74490.1 23964902
AT2G18790.1 CDX68181 AT1G74490.1 23964902
AT2G18790.1 CDX85839 AT1G74490.1 23964902
AT2G18790.1 CDY50604 AT1G74490.1 23964902
AT2G18790.1 CDY03026 AT2G02950.1 10348744
AT2G18790.1 CDY09346 AT2G02950.1 10348744
AT2G18790.1 CDY17423 AT2G02950.1 10348744
AT2G18790.1 CDY45189 AT2G02950.1 10348744
AT2G18790.1 CDY60835 AT2G02950.1 10348744
AT2G18790.1 CDY62179 AT2G02950.1 10348744
AT2G18790.1 CDX75900 AT2G18790.1 15273290
AT2G18790.1 CDX82382 AT2G18790.1 15273290
AT2G18790.1 CDX92112 AT2G18790.1 15273290
AT2G18790.1 CDX95888 AT2G18790.1 15273290
AT2G18790.1 CDX75900 AT2G18790.1 19286967
AT2G18790.1 CDX82382 AT2G18790.1 19286967
AT2G18790.1 CDX92112 AT2G18790.1 19286967
AT2G18790.1 CDX95888 AT2G18790.1 19286967
AT2G18790.1 CDX77035 AT2G26190.1 23964902
AT2G18790.1 CDY35312 AT2G26190.1 23964902
AT2G18790.1 CDX77035 AT2G26190.1 23964902
AT2G18790.1 CDY35312 AT2G26190.1 23964902
AT2G18790.1 CDY12145 AT2G32950.1 11752373
AT2G18790.1 CDY52540 AT2G32950.1 11752373
AT2G18790.1 CDY54115 AT2G34590.1 23964902
AT2G18790.1 CDY54116 AT2G34590.1 23964902
AT2G18790.1 CDY54117 AT2G34590.1 23964902
AT2G18790.1 CDX79871 AT2G42400.1 22904146
AT2G18790.1 CDY14829 AT2G42400.1 22904146
AT2G18790.1 CDY47967 AT2G42400.1 22904146
AT2G18790.1 CDY64518 AT2G42400.1 22904146
AT2G18790.1 CDX79871 AT2G42400.1 22904146
AT2G18790.1 CDY14829 AT2G42400.1 22904146
AT2G18790.1 CDY47967 AT2G42400.1 22904146
AT2G18790.1 CDY64518 AT2G42400.1 22904146
AT2G18790.1 CDX74726 AT2G45290.1 23964902
AT2G18790.1 CDY68196 AT2G45290.1 23964902
AT2G18790.1 CDX80064 AT2G46970.1 23964902
AT2G18790.1 CDX83349 AT2G46970.1 23964902
AT2G18790.1 CDY50911 AT2G46970.1 23964902
AT2G18790.1 CDY66254 AT2G46970.1 23964902
AT2G18790.1 CDX80064 AT2G46970.1 23964902
AT2G18790.1 CDX83349 AT2G46970.1 23964902
AT2G18790.1 CDY50911 AT2G46970.1 23964902
AT2G18790.1 CDY66254 AT2G46970.1 23964902
AT2G18790.1 CDY01177 AT4G13940.1 23964902
AT2G18790.1 CDY47309 AT4G13940.1 23964902
AT2G18790.1 CDY50423 AT4G13940.1 23964902
AT2G18790.1 CDY58805 AT4G13940.1 23964902
AT2G18790.1 CDX78827 AT4G18130.1 15273290
AT2G18790.1 CDY61670 AT4G18130.1 15273290
AT2G18790.1 CDX78827 AT4G18130.1 19286967
AT2G18790.1 CDY61670 AT4G18130.1 19286967
AT2G18790.1 CDX78988 AT4G20360.1 23964902
AT2G18790.1 CDX82758 AT4G20360.1 23964902
AT2G18790.1 CDX94002 AT4G20360.1 23964902
AT2G18790.1 CDX98668 AT4G20360.1 23964902
AT2G18790.1 CDY31442 AT4G20360.1 23964902
AT2G18790.1 CDY54570 AT4G20360.1 23964902
AT2G18790.1 CDX69524 AT5G15450.1 23964902
AT2G18790.1 CDX85551 AT5G15450.1 23964902
AT2G18790.1 CDX85552 AT5G15450.1 23964902
AT2G18790.1 CDX90991 AT5G15450.1 23964902
AT2G18790.1 CDY26423 AT5G15450.1 23964902
AT2G18790.1 CDY06455 AT5G35840.1 15273290
AT2G18790.1 CDY38546 AT5G35840.1 15273290
AT2G18790.1 CDY06455 AT5G35840.1 19286967
AT2G18790.1 CDY38546 AT5G35840.1 19286967
AT2G18790.1 CDY03233 AT5G46240.1 23964902
AT2G18790.1 CDY33464 AT5G46240.1 23964902
AT2G18790.1 CDY35154 AT5G46240.1 23964902
AT2G18790.1 CDY62359 AT5G46240.1 23964902
AT2G18790.1 CDX86314 AT5G48300.1 23964902
AT2G18790.1 CDY68655 AT5G48300.1 23964902
AT2G18790.1 CDX86314 AT5G48300.1 23964902
AT2G18790.1 CDY68655 AT5G48300.1 23964902
AT2G18790.1 CDX86314 AT5G48300.1 23964902
AT2G18790.1 CDY68655 AT5G48300.1 23964902
AT2G18790.1 CDY31531 AT5G60600.1 23964902
AT2G18790.1 CDY53636 AT5G60600.1 23964902
AT2G18790.1 CDY53637 AT5G60600.1 23964902
AT2G18790.1 CDY08822 AT5G65090.1 23964902
AT2G18790.1 CDY14538 AT5G65090.1 23964902
AT2G18790.1 CDY31285 AT5G65090.1 23964902
AT2G18790.1 CDY33984 AT5G65090.1 23964902
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX82382 Canola cytosol 15.06 94.57
CDX92112 Canola cytosol 87.01 88.62
CDX95888 Canola cytosol 88.31 87.33
AT2G18790.1 Thale cress nucleus 87.97 86.69
Os03t0309200-01 Rice nucleus, plasma membrane 70.04 72.23
Zm00001d028905_P001 Maize extracellular 70.74 70.37
EER94971 Sorghum plastid 71.26 69.86
TraesCS4D01G183400.1 Wheat plastid 69.96 69.42
HORVU4Hr1G053400.1 Barley plasma membrane 70.13 69.35
TraesCS4B01G182400.1 Wheat plastid 69.96 69.3
TraesCS4A01G122500.2 Wheat plastid 69.96 69.3
Zm00001d047632_P001 Maize plastid 69.61 68.95
GSMUA_Achr3P08340_001 Banana nucleus 63.81 67.68
Zm00001d025231_P001 Maize cytosol 8.14 58.75
CDY61670 Canola cytosol 53.85 55.73
CDX78827 Canola cytosol 51.69 55.28
Zm00001d000219_P001 Maize cytosol 5.19 54.05
CDY22632 Canola cytosol, plastid 49.61 51.02
CDY06362 Canola cytosol, plastid 49.44 50.94
CDY06455 Canola cytosol, mitochondrion, nucleus, plastid 47.88 49.46
CDY50896 Canola endoplasmic reticulum, plastid, vacuole 49.7 49.44
CDY38546 Canola cytosol, plastid 47.79 49.42
CDY42549 Canola cytosol 9.61 49.12
CDX93501 Canola cytosol 49.87 47.92
Zm00001d024238_P001 Maize cytosol 12.73 33.41
Protein Annotations
MapMan:26.1.1.1MapMan:26.4.1.2Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10
GO:A0A078CGB3EnsemblPlants:CDX75900ProteinID:CDX75900ProteinID:CDX75900.1InterPro:GAFInterPro:GAF-like_dom_sf
GO:GO:0000155GO:GO:0003674GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515
GO:GO:0006139GO:GO:0006355GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585GO:GO:0009605GO:GO:0009628
GO:GO:0009881GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0017006GO:GO:0018298
GO:GO:0019538GO:GO:0038023GO:GO:0042803EnsemblPlantsGene:GSBRNA2T00123902001InterPro:HATPase_CInterPro:HATPase_C_sf
InterPro:HisK_dim/PInterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016
InterPro:IPR036890InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360
PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446PIRSF:PIRSF000084
PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109PFscan:PS50112PANTHER:PTHR43719
PANTHER:PTHR43719:SF12InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-reg
SMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388SUPFAM:SSF55781SUPFAM:SSF55785
SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI0004EE99EESEG:seg::
Description
BnaC03g39830D
Coordinates
chrLK031805:+:1694403..1698647
Molecular Weight (calculated)
127207.0 Da
IEP (calculated)
6.010
GRAVY (calculated)
-0.083
Length
1155 amino acids
Sequence
(BLAST)
0001: MVSGVSGAGR GGGREAASSS HSPDHTLHTT HHRRDQAQSS GTKSLKPQSH TESMSKAIQQ YTVDARLHAV FEQSGKSFDY SHSLKTTTYG SSVVPEQQIT
0101: AYLSRIQRGG YIQPFGCMIA VAESTFTIIA FSENAREMLG LTPQSVPSLE RPEILAMGAD LRSLFTASSS VILERAFVAR EITLLNPVWI HSKNTGKPFY
0201: AILHRIDVGV VIDLEPARTE DPALSIAGAV QSQKLAVRAI SQLQSLPGGD IKLLCDTVVE NVRDLTGYDR VMVYKFHEDE HGEVVAESRR EDLEPYIGLH
0301: YPATDIPQAS RFLFKQNRVR MIVDCHATPV LVVQDDRLTQ SMCLVGSTLR APHGCHSQYM ANMGSIASLA MAVIINGNDE DGSGRSSMRL WGLVVCHHTS
0401: SRCIPFPLRY ACEFLMQAFG LQLNMELQLA LQISEKRVLR TQTLLCDMLL RDSPAGIVTQ SPSIMDLVKC DGAAFLYHGK YYPLGVAPSE AQIKDVVEWL
0501: LASHAESTGL STDSLGDAGY PGAAALGNAV CGMAVACITK RDFLFWFRSH TAKEVKWGGA KHHPEDKDDG QRMHPRSSFI AFLEVVKSRS QPWETVEMDA
0601: IHSLQLILRD SFKEAEAAMN SRGGDGAVQA CGGEQGIDEL GTVAREMVRL IETATVPIFA VDSGGCVNGW NAKIAELTGL SVEEAMGKSL VSDLIYKENE
0701: ETVDMLISRA LRGDEDKNVE VKLKTFSPEL QGKAVFVVVN ACSSKDYLNN IVGVCFVGQD VTGQKIVMDK FINIQGDYKA IVHSPSPLIP PIFAADENTC
0801: CLEWNTAMEF LTGWPRGEVI GKTLVGEVFG SCCRLKGPDA LTKFMIVLHN AIGGQETEKF PLPFFDRNGK FVQALLTANK RVSLEGKVIG AFCFLHIPSL
0901: ELQQALAVQR RQDSETKSKE LAYICQVIKS PLSGLRFTNS LLEGTELNEN QKQFLETSVS CEKQISRIVS DMDLEKLDDG TFELVREEFY LGSVINAVVS
1001: QAMFLLRERG LQLIRDIPEE IKSIAVYGDQ TRTQQLLAEF LLSIIRYAPS QEWVEIHLSQ VSKPMAAGSS AIRTEFRMAC PGEGLPPELV RDMFHGSRWT
1101: SPEGLGLSVC RKILKLMNGE VQYIRESERS YFLIILELPV PPLSTAGGDM MLMMT
Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.