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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • mitochondrion 1
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:plastid
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX75900
CDX78827
CDX82382
CDX92112
CDX95888
CDY61670

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18130.1 CDX75900 AT2G18790.1 15273290
AT4G18130.1 CDX82382 AT2G18790.1 15273290
AT4G18130.1 CDX92112 AT2G18790.1 15273290
AT4G18130.1 CDX95888 AT2G18790.1 15273290
AT4G18130.1 CDX75900 AT2G18790.1 19286967
AT4G18130.1 CDX82382 AT2G18790.1 19286967
AT4G18130.1 CDX92112 AT2G18790.1 19286967
AT4G18130.1 CDX95888 AT2G18790.1 19286967
AT4G18130.1 CDX78827 AT4G18130.1 15273290
AT4G18130.1 CDY61670 AT4G18130.1 15273290
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78827 Canola cytosol 93.91 97.04
AT4G18130.1 Thale cress cytosol 86.92 87.23
VIT_10s0003g02680.t01 Wine grape vacuole 61.65 65.28
KRH37778 Soybean nucleus 61.65 61.43
PGSC0003DMT400007944 Potato cytosol, plastid 61.29 60.21
Solyc02g071260.2.1 Tomato cytosol, plastid 61.11 59.98
KRH12820 Soybean cytosol 58.69 59.65
CDX92112 Canola cytosol 55.91 55.03
CDX75900 Canola cytosol 55.73 53.85
CDX95888 Canola cytosol 55.91 53.42
CDY06362 Canola cytosol, plastid 47.4 47.19
CDY22632 Canola cytosol, plastid 46.95 46.66
CDY50896 Canola endoplasmic reticulum, plastid, vacuole 46.68 44.88
CDY38546 Canola cytosol, plastid 44.53 44.49
CDY06455 Canola cytosol, mitochondrion, nucleus, plastid 44.44 44.36
CDX93501 Canola cytosol 46.68 43.34
CDX82382 Canola cytosol 6.27 38.04
CDY42549 Canola cytosol 6.81 33.63
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10
GO:A0A078J9D6UniProt:A0A078J9D6EnsemblPlants:CDY61670ProteinID:CDY61670ProteinID:CDY61670.1InterPro:GAF
InterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674GO:GO:0003824GO:GO:0004871
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585GO:GO:0009605GO:GO:0009628
GO:GO:0009881GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0017006GO:GO:0018298
GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0042803GO:GO:0050896EnsemblPlantsGene:GSBRNA2T00034168001
InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467
InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2
InterPro:PAS_foldPFAM:PF00360PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518
PFAM:PF08446PIRSF:PIRSF000084PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109
PFscan:PS50112PANTHER:PTHR43719PANTHER:PTHR43719:SF17InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:Phytochrome
InterPro:Phytochrome_A-EInterPro:Phytochrome_cen-regSMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388
SUPFAM:SSF55781SUPFAM:SSF55785SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI0004EED29BSEG:seg
Description
BnaC01g40810DPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A078J9D6]
Coordinates
chrLK034024:+:26193..29922
Molecular Weight (calculated)
122629.0 Da
IEP (calculated)
6.361
GRAVY (calculated)
-0.161
Length
1116 amino acids
Sequence
(BLAST)
0001: MGFESSSSAA SNMKQPQKSN TAQQYSVDAG LLADFDHSVN SGKSFNYSKS MISPPNNVPD ERITAYLSNI QRGGLVQPFG CLIAVQEPSF RILGVSDNCI
0101: DFLGLSLAST SQPNEFTVKG LIGIDARSLF TPSSGASLAK AASFTEISLM NPVLVHSRTT TTAQKPFYAI LHRIDAGIVI DLEPAKSSDP ALTLAGAVQS
0201: QKLAVRAISR LQSLPGGDIG ALCDTVVEDV QRLTGYDRVM VYQFHEDDHG EVVSEIRRSD LEPYLGLHYP ATDIPQAARF LFKQNRVRMI CDCNATPVKV
0301: VQSDELKRSL CLVNSTLRAP HSCHTQYMAN MGSIASLALA IVTKTKNSSK LWGLVVGHHC SPRYVPFPLR YACEFLMQAF GLQLQMELQL ASQLSEKKAM
0401: KTQTLLCDML LRDTVSAIVT QSPGIMDLVK CDGAALYYKG KCWLVGVTPS ESQVKDLVDW LVENHGDEST GLTTDSLVDA GYPGAVSLGD KVCGVAAAGI
0501: SLKDYLIWFR SNTASAIKWG GAKHLPKDKD DAGRMHPRSS FKAFLEVAKS RSLPWEASEI DAIHSLRVIM RESFTISTPV VLSSGNNNGV VGRDASELTS
0601: FVCEMVRVIE TATAPIFGVD SNGCVNGWNN KTAEMTGLGA GEAMGKSLAD EIVQEESRGA LESVLSKALR GEEKKNVMLK LRKFGNKDSS SSDVCVLVNS
0701: CTSRDYTEKI VGVCFVGQDM TSEKAITDRF IRLQGDYKTI VQSLNPLIPP IFASDENARC SEWNAAMEKL TGWSKHEVIG RMLPGEVFGD LCKVKCQDTL
0801: TKFLISLYQG IAGGGNVPES SLVGFFSKEG KYIEASLTAN KSTNTEGKVI GCFFFLQIIN KESSSSSPEV KESAQSFNEL AYIRQEIKNP LNGIRFAHKL
0901: LESSEISENQ RQFLETSDAC EKQIATIIED TDLKSIEEGK LQMETEEFRL ESVLDTIISQ VMIMLRERKS QLRVEVSQEI KTLPLYGDRV KLQLILADLL
1001: RNIVNHAPFP DSWVGIKISP GHKLARDNDR YIHLQFRMIH PGKGLPSEML SDMFETREGW VTPDGLGLKL SRKLLEQMNG RVSYVREDER CFFQVDLQVK
1101: TRLGVETIGT EAGSSI
Best Arabidopsis Sequence Match ( AT4G18130.1 )
(BLAST)
0001: MGFESSSSAA SNMKPQPQKS NTAQYSVDAA LFADFAQSIY TGKSFNYSKS VISPPNHVPD EHITAYLSNI QRGGLVQPFG CLIAVEEPSF RILGLSDNSS
0101: DFLGLLSLPS TSHSGEFDKV KGLIGIDART LFTPSSGASL SKAASFTEIS LLNPVLVHSR TTQKPFYAIL HRIDAGIVMD LEPAKSGDPA LTLAGAVQSQ
0201: KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ RLTGYDRVMV YQFHEDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV
0301: QSEELKRPLC LVNSTLRAPH GCHTQYMANM GSVASLALAI VVKGKDSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMR
0401: TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC DGAALYYKGK CWLVGVTPNE SQVKDLVNWL VENHGDDSTG LTTDSLVDAG YPGAISLGDA VCGVAAAGFS
0501: SKDYLLWFRS NTASAIKWGG AKHHPKDKDD AGRMHPRSSF TAFLEVAKSR SLPWEISEID AIHSLRLIMR ESFTSSRPVL SGNGVARDAN ELTSFVCEMV
0601: RVIETATAPI FGVDSSGCIN GWNKKTAEMT GLLASEAMGK SLADEIVQEE SRAALESLLC KALQGEEEKS VMLKLRKFGQ NNHPDYSSDV CVLVNSCTSR
0701: DYTENIIGVC FVGQDITSEK AITDRFIRLQ GDYKTIVQSL NPLIPPIFAS DENACCSEWN AAMEKLTGWS KHEVIGKMLP GEVFGVFCKV KCQDSLTKFL
0801: ISLYQGIAGD NVPESSLVEF FNKEGKYIEA SLTANKSTNI EGKVIRCFFF LQIINKESGL SCPELKESAQ SLNELTYVRQ EIKNPLNGIR FAHKLLESSE
0901: ISASQRQFLE TSDACEKQIT TIIESTDLKS IEEGKLQLET EEFRLENILD TIISQVMIIL RERNSQLRVE VAEEIKTLPL NGDRVKLQLI LADLLRNIVN
1001: HAPFPNSWVG ISISPGQELS RDNGRYIHLQ FRMIHPGKGL PSEMLSDMFE TRDGWVTPDG LGLKLSRKLL EQMNGRVSYV REDERCFFQV DLQVKTMLGV
1101: ESRGTEGSSS IK
Arabidopsis Description
PHYEPhytochrome E [Source:UniProtKB/Swiss-Prot;Acc:P42498]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.