CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031672.1-P	Field mustard	cytosol, plastid	99.11	99.11
CDY22632	Canola	cytosol, plastid	96.7	96.53
AT1G09570.3	Thale cress	cytosol	93.04	92.63
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	92.86	89.66
CDX93501	Canola	cytosol	93.22	86.94
VIT_14s0060g00100.t01	Wine grape	nucleus	80.37	80.16
Solyc10g044670.1.1	Tomato	extracellular	78.41	78.27
PGSC0003DMT400040772	Potato	cytosol	78.06	77.92
KRG90417	Soybean	nucleus	77.61	77.47
KRG96653	Soybean	nucleus	73.86	73.27
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	77.34	72.8
HORVU0Hr1G023250.4	Barley	cytosol	21.05	67.82
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	64.59	67.35
HORVU1Hr1G068750.7	Barley	cytosol	21.23	67.04
TraesCS4B01G052000.1	Wheat	mitochondrion	52.27	66.21
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	56.2	64.68
OQU91090	Sorghum	nucleus	64.5	63.93
Zm00001d033799_P001	Maize	cytosol	64.32	63.75
Zm00001d013402_P005	Maize	nucleus	64.23	63.66
Os03t0719800-01	Rice	plastid	63.78	63.39
GSMUA_Achr5P27310_001	Banana	cytosol	8.65	62.58
Zm00001d008542_P001	Maize	cytosol	13.38	61.98
TraesCS4A01G262900.1	Wheat	mitochondrion	62.44	61.95
HORVU4Hr1G008610.2	Barley	mitochondrion	62.35	61.86
TraesCS4D01G052200.1	Wheat	plastid	62.18	61.46
OQU91089	Sorghum	cytosol	9.28	58.1
CDY38546	Canola	cytosol, plastid	51.03	51.21
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	50.85	50.98
CDX92112	Canola	cytosol	51.56	50.97
CDX75900	Canola	cytosol	50.94	49.44
CDX95888	Canola	cytosol	50.94	48.89
CDX78827	Canola	cytosol	45.85	47.59
CDY61670	Canola	cytosol	47.19	47.4
CDX82382	Canola	cytosol	5.62	34.24
CDY42549	Canola	cytosol	5.89	29.2

Protein Annotations

Gene3D:1.10.287.130	MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	Gene3D:3.30.565.10
GO:A0A078EZI3	EnsemblPlants:CDY06362	ProteinID:CDY06362	ProteinID:CDY06362.1	ncoils:Coil	InterPro:GAF
InterPro:GAF-like_dom_sf	GO:GO:0000155	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009585	GO:GO:0009605
GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0017006
GO:GO:0018298	GO:GO:0019538	GO:GO:0038023	GO:GO:0042803	EnsemblPlantsGene:GSBRNA2T00122298001	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:His_kinase_dom	InterPro:IPR000014	InterPro:IPR005467	InterPro:IPR016132
InterPro:IPR029016	InterPro:IPR036890	InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_2	InterPro:PAS_fold
PFAM:PF00360	PFAM:PF00989	PFAM:PF01590	PFAM:PF02518	PFAM:PF08446	PIRSF:PIRSF000084
PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109	PFscan:PS50112	PANTHER:PTHR43719
PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_A-E	InterPro:Phytochrome_cen-reg
SMART:SM00065	SMART:SM00091	SMART:SM00387	SMART:SM00388	SUPFAM:SSF55781	SUPFAM:SSF55785
SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI0004EDC91A	SEG:seg	:	:

Description

BnaA09g48410D

Coordinates

chrLK031968:-:975955..980493

Molecular Weight (calculated)

124069.0 Da

IEP (calculated)

5.824

GRAVY (calculated)

-0.135

Length

1121 amino acids

Sequence
(BLAST)

0001: MSSSRPSQSS EGSSRRSRHS ARIIAQTTVD AKLHADFEES GGSSFDYSTS VRVTTPAVEN NQPPRSDKVT TTYLHHIQKG KLIQPFGCLL ALDEKTFKVI
0101: AYSENAPELL TMASHAVPSV GESPVLGVGT DIRSLFTAPS ASSLQKALGF GDVSLLNPIL VHCRTSAKPF YAIVHRVTGS IVVDFEPVKP YEVPMTAAGA
0201: LQSYKLAAKA ITRLQSLPSG SMERLCDTMV QEVFELTGYD RVMAYKFHED DHGEVVSEVT KPGLEPYLGL HYPATDIPQA ARFLFMKNKV RMIVDCNAKH
0301: VKVLQDEKLS FDLTLCGSTL RAPHTCHLQY MANMDSIASL VMAVVVNEEE DGEATTPQKR KRLWGLVVCH NTTPRFVPFP LRYACEFLAQ VFAIHVNKEV
0401: ELENQIVEKN ILRTQTLLCD MLMRDAPLGI VSQSPNIMDL VKCDGAALLY KDKVWNLGTT PSEFHLQEIA FWLCEHHADS TGLSTDSLHD AGFPGALSLG
0501: DSVCGMAAVR ISSKDMIFWF RSHTAGEVRW GGAKHDPDDR DDARRMHPRS SFKAFLEVVK TRSLPWKDYE MDAIHSLQLI LRSAFKDGES SDVNANIIHS
0601: KLNDLKIDGM QELEAVTSEM VRLIETATVP ILAVDSDGLV NGWNTKIAEL TGLTVDEAIG KDFLTLVEDS SVEIVQRMLE NALEGTEEQN VQFEIKTHLS
0701: RTDAGPISLV VNACASKDLH ENVVGVCFVA HDLTAQKTVM DKFTRIEGDY KAIIQNPNPL IPPIFGTDES GWCTEWNPAM SKLTGLKREE VVEKMLLGEV
0801: FGTQKKSCCR LKNQEAFVNL GIVLNNAVTS EDAEKVPFGF FTRGGKYVEC LLCVSKKLDR EGAVTGVFCF LQLASYELQQ ALHVQRLAER TALKRLKALA
0901: YIKREIRNPL SGIMFTRKMM EGTEIGPEQR MILQTSGLCE KQLSKILDDS DLESIIEGCL DLEMKEFTLN EVLTASTSQV MMKSNGKSVR VANETKEEVM
1001: SDTLYGDSIR LQQVLADIML MSVNFTPSGG QLTVTASLRK DQLGRSVHLA YLEIRITHTG AGLPEFLLNQ MFGSEEDVSE EGLSLMVSRK LVKLMNGDVQ
1101: YLREAGKSSF IITAELAAAS K

Best Arabidopsis Sequence Match ( AT1G09570.3 )
(BLAST)

0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.