Factsheet for GSMUA_Achr8P06130_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
extracellular 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008542_P001	Maize	cytosol	15.26	67.77
VIT_14s0060g00100.t01	Wine grape	nucleus	70.51	67.44
GSMUA_Achr5P27310_001	Banana	cytosol	9.67	67.1
TraesCS4B01G052000.1	Wheat	mitochondrion	55.07	66.89
Os03t0719800-01	Rice	plastid	69.58	66.31
Solyc10g044670.1.1	Tomato	extracellular	69.02	66.07
PGSC0003DMT400040772	Potato	cytosol	68.84	65.89
KRG90417	Soybean	nucleus	68.47	65.54
OQU91090	Sorghum	nucleus	68.93	65.52
AT1G09570.3	Thale cress	cytosol	68.56	65.45
Zm00001d033799_P001	Maize	cytosol	68.74	65.34
HORVU4Hr1G008610.2	Barley	mitochondrion	68.65	65.31
Zm00001d013402_P005	Maize	nucleus	68.47	65.08
CDY22632	Canola	cytosol, plastid	67.53	64.65
Bra031672.1-P	Field mustard	cytosol, plastid	67.35	64.59
CDY06362	Canola	cytosol, plastid	67.35	64.59
TraesCS4A01G262900.1	Wheat	mitochondrion	67.81	64.51
TraesCS4D01G052200.1	Wheat	plastid	67.26	63.76
KRG96653	Soybean	nucleus	66.7	63.45
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	68.47	63.39
OQU91089	Sorghum	cytosol	10.42	62.57
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	68.09	61.46
CDX93501	Canola	cytosol	68.47	61.23
HORVU0Hr1G023250.4	Barley	cytosol	19.63	60.63
Bra020013.1-P	Field mustard	cytosol	68.19	60.58
HORVU1Hr1G068750.7	Barley	cytosol	19.53	59.15
GSMUA_Achr4P32940_001	Banana	cytosol	6.23	57.76
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	50.79	56.06
GSMUA_Achr6P00080_001	Banana	mitochondrion	49.77	53.34
GSMUA_Achr3P08340_001	Banana	nucleus	49.49	48.85
GSMUA_Achr4P32930_001	Banana	cytosol	25.86	47.2

Protein Annotations

Gene3D:1.10.287.130	MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	Gene3D:3.30.565.10
ncoils:Coil	InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0004672	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0006412	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009584	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630
GO:GO:0009638	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	GO:GO:0010018	GO:GO:0010161
GO:GO:0010201	GO:GO:0010203	GO:GO:0010218	GO:GO:0016301	GO:GO:0016604	GO:GO:0016740
GO:GO:0017148	GO:GO:0018298	GO:GO:0019538	GO:GO:0023014	GO:GO:0031516	GO:GO:0038023
GO:GO:0042802	GO:GO:0046685	EnsemblPlantsGene:GSMUA_Achr8G06130_001	EnsemblPlants:GSMUA_Achr8P06130_001	EnsemblPlants:GSMUA_Achr8T06130_001	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR000014	InterPro:IPR005467
InterPro:IPR016132	InterPro:IPR029016	InterPro:IPR036890	UniProt:M0TN16	InterPro:PAS	InterPro:PAS-like_dom_sf
InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00512	PFAM:PF00989	PFAM:PF01590
PFAM:PF02518	PFAM:PF08446	PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109
PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome
InterPro:Phytochrome_cen-reg	SMART:SM00065	SMART:SM00091	SMART:SM00387	SMART:SM00388	SUPFAM:SSF47384
SUPFAM:SSF55781	SUPFAM:SSF55785	SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI0002965796	SEG:seg

Description

Phytochrome type A [Source:GMGC_GENE;Acc:GSMUA_Achr8G06130_001]

Coordinates

chr8:-:3984520..3990261

Molecular Weight (calculated)

119004.0 Da

IEP (calculated)

5.903

GRAVY (calculated)

-0.098

Length

1075 amino acids

Sequence
(BLAST)

0001: MSSSRPTQSS TSSSRSRHSA RIVAQTTVDA KLDADFEEFG ESFDYLQSVY ALRAPSGDQR RSEKVTAYLQ HIQKGKFIQS FGCLLALDEK SFKVIAYSEN
0101: APEMLTMVSH AVPSVGDHPV LGIGTDVRSL FTSPSTAALQ KALGFAEVSL LNPILVHCKT SGKPFYAIVH RVTGCLIVDF EPVKPSEVPM TAAGALQSYK
0201: LAAKAIAKLQ SLPGGSIQRL CNTVIDEVFE LTGYDRVMVY KFHEDDHGEL PFDITFCGST LRAPHSCHLQ YMENMNSIAS LVMAVVVNEG DEDDDTEAGQ
0301: QPQRQKRKRL WGLVVCHNET PRFVPFPLRY ACEFLMQVFA IHVSKEIELE NQIREKNILR TQTLLCDMLL KETSPIGIVT QSPNIMDLVK CGGAALLYQN
0401: KVWRLGLAPT EPQIRDIAYW LTDYHMDSTG LSTDSLMDAG YPGASALGDS VCGMAAARIT SRDVLFWFRS HTADEVRWGG AKHDPSDKDD GSRMHPRSSF
0501: KAFLEVVKMK SLPWNDYEMD AIHSLQLILR GSLNENDSAS KKDTLDSRIN DLKLEGLVEL QAVTNEMVRL IETATVPILA VDVDGIINGW NLKIAELTGL
0601: SVDQAIGKHL LSLVEECSAD AVREMLHLAL QGKEEQNVQF QMKTYGPRSD DGPVILIVNA CASRDINDHV VGVCFVAQDM TGHKMVLDKF TRIEGDYKAI
0701: VHNPSPLIPP IFGADEFGWC SEWNAAMTKL SGWQRDEVID KMLLGEVFGS HVACCRMKNQ DTYVILSILV NNAMTGQETE KAPFSFINRN GKLVECLLSV
0801: SKKVGEDGMV TGVFCFLHTA SHELQHVLQV KQISEQSVMK RLKALGYIRH EIRNPLSGIM HSRKMLEGTD LCDEQRQLLN TGAKCHRQLN RILDDLDLEN
0901: IMDSWLDLEM VEFVLHDLVV TAVSQVMLAS QSKGVRIVYD LSDGFMNEGV FGDSLRLQQI LAGFLLVSVK SSPSGGLVEI AASLIKDQLG KSLHVLHLEL
1001: RITHTGSGVP DDLLSEMFGT SEDPSEEGLG LLVCRKLLRL MNGDVRYLRE AGKSGFIVSV ELASAPKSRG TRTLV

Best Arabidopsis Sequence Match ( AT1G09570.3 )
(BLAST)

0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.