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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 1
  • plastid 2
  • mitochondrion 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr3P08340_001
GSMUA_Achr4P32930_001
GSMUA_Achr4P32940_001
GSMUA_Achr6P00080_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G35840.1 GSMUA_Achr3P08340_001 AT2G18790.1 15273290
AT5G35840.1 GSMUA_Achr3P08340_001 AT2G18790.1 19286967
AT5G35840.1 GSMUA_Achr3P08340_001 AT4G16250.1 19286967
AT5G35840.1 GSMUA_Achr4P32930_001 AT5G35840.1 15273290
AT5G35840.1 GSMUA_Achr4P32940_001 AT5G35840.1 15273290
AT5G35840.1 GSMUA_Achr6P00080_001 AT5G35840.1 15273290
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr4P32940_001 Banana cytosol 8.77 75.86
GSMUA_Achr4P32930_001 Banana cytosol 43.67 74.36
Zm00001d018728_P001 Maize cytosol, mitochondrion 13.86 65.26
VIT_12s0057g00980.t01 Wine grape cytosol, plastid 71.88 64.49
EER93439 Sorghum plastid 70.99 62.73
TraesCS5D01G401000.1 Wheat cytosol, plastid 71.19 62.69
Zm00001d034038_P002 Maize peroxisome 70.49 62.29
Os03t0752100-01 Rice cytosol 14.06 61.57
HORVU5Hr1G095530.2 Barley plastid 70.39 61.55
TraesCS5A01G391300.2 Wheat cytosol, plastid 70.79 61.0
PGSC0003DMT400044822 Potato plastid 67.5 60.45
Zm00001d006712_P001 Maize peroxisome 10.47 60.0
Solyc07g045480.2.1 Tomato plastid 65.6 58.86
TraesCS5B01G396200.1 Wheat plastid 66.1 57.55
Zm00001d050162_P001 Maize cytosol 7.28 52.9
AT5G35840.1 Thale cress mitochondrion 58.42 52.75
CDY06455 Canola cytosol, mitochondrion, nucleus, plastid 58.23 52.24
Zm00001d012117_P001 Maize cytosol 7.58 52.05
Zm00001d022520_P001 Maize cytosol 7.58 52.05
CDY38546 Canola cytosol, plastid 57.83 51.92
Bra039485.1-P Field mustard cytosol, plastid 57.83 51.92
Zm00001d013262_P001 Maize nucleus, plastid 70.49 51.57
GSMUA_Achr5P27310_001 Banana cytosol 7.78 50.32
GSMUA_Achr8P06130_001 Banana cytosol, mitochondrion 53.34 49.77
GSMUA_Achr3P08340_001 Banana nucleus 52.64 48.48
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10
InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674GO:GO:0003824
GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585GO:GO:0009605
GO:GO:0009628GO:GO:0009881GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0017006
GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0042803GO:GO:0050896
EnsemblPlantsGene:GSMUA_Achr6G00080_001EnsemblPlants:GSMUA_Achr6P00080_001EnsemblPlants:GSMUA_Achr6T00080_001InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/P
InterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890
UniProt:M0T2V6InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360
PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446PRINTS:PR01033PFscan:PS50046
PFscan:PS50109PFscan:PS50112PANTHER:PTHR43719PANTHER:PTHR43719:SF4InterPro:Phyto_chromo_attachmentInterPro:Phytochrome
InterPro:Phytochrome_cen-regSMART:SM00065SMART:SM00091SMART:SM00387SUPFAM:SSF55781SUPFAM:SSF55785
SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI000295BED9SEG:seg::
Description
Phytochrome C [Source:GMGC_GENE;Acc:GSMUA_Achr6G00080_001]
Coordinates
chr6:-:54082..59013
Molecular Weight (calculated)
111300.0 Da
IEP (calculated)
5.914
GRAVY (calculated)
-0.156
Length
1003 amino acids
Sequence
(BLAST)
0001: MSSRSNRASC SRSSSARSKH SARVVAQTTL DAKLHADFED PDHPFDYSSS IGAANRENAP EMLDLAPHAV PTMEQREALT IGTDIRTLFR SPSSVALQKA
0101: AGFSDVNLLN PILVHCRSSG KPFYAIMHRI DVGLVIDLEP VNPADVPVTA AGALKSYKLA AKAISRLQSL PSGNISLLCD VLVREVSDLT GYDRVMAYKF
0201: HEDEHGEVIA ECRRPELEAP HGCHSQYMAN MGSTASLVMS VTISEDEDEA GGDQQHKGRK LWGLLVCHHT SPRFIPFPLR YACEFLMQVF GVQLNKEVEL
0301: GAQLKEKHIL RTQTLLCDML LRDAPIGIFT RSPNVMDLVK CDGAALYYRN QVWLLETTPT EAQIRDIVAW LVECHDGSTG LSTDSMTEAG YPGAAELGDA
0401: VCGMAAIKIS SRDFLFWFRS HTAKEIIWGG AKHEPVDKDD EDRRMHPRTS FKAFLEVVKR RSLPWEDVEM DAIHSLQLIL RGSLQGETVD VDSKIIVSAS
0501: PDDANKIQWV DELRTVTNEM VRLIETASVP IWAIDASGNI NGWNSKAADL TGLPVQEAIG MPLIDIVKDD SVDVAKNVLH LALQGKEEKN IEIKLKSFSH
0601: QESNSSVILV VNSCCSRDVK DNIVGVCFVA QDYGCCFEWN SAMEKVSGIK RKDAIDKMLV GELFCLHGFG CRVKDHDTLT KLRIVLNGVM AGEDADKFIF
0701: GFFDLNGKYV EALLSANKRI DSEGKNTGAL CFMRVASPEL QHALQVQKLS EQAAINSLKE LAYLRQEIRN SLNGITFTQN LMEATDLTEE QKQLLRRKAL
0801: CQEQLAKILD DMDLDSIEQC YMELNTVEFN LGEALDAVIN QGMALSRERE VALLQDWPAE VSSMYLYGDN LRLQQVLADF LSSALQFAPV ADGSIALQVI
0901: PRKERIGTGV QVVHLKFRII HPAPGIPETL VQEMFHHSQG MSREGLGLFI SQKLVKIMNG TVQYLREAER SSFIILVEFP LVQHHTGSRT HGSSTSKKKL
1001: HLA
Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)
0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
Arabidopsis Description
PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.