CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
peroxisome 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93439
EER94971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35840.1	EER94971	AT2G18790.1	15273290
AT5G35840.1	EER94971	AT2G18790.1	19286967
AT5G35840.1	EER94971	AT4G16250.1	19286967
AT5G35840.1	EER93439	AT5G35840.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034038_P002	Maize	peroxisome	92.86	92.86
Zm00001d006712_P001	Maize	peroxisome	13.83	89.71
TraesCS5D01G401000.1	Wheat	cytosol, plastid	86.08	85.78
HORVU5Hr1G095530.2	Barley	plastid	85.73	84.83
TraesCS5A01G391300.2	Wheat	cytosol, plastid	85.9	83.76
Os03t0752100-01	Rice	cytosol	16.21	80.35
TraesCS5B01G396200.1	Wheat	plastid	80.97	79.77
Zm00001d013262_P001	Maize	nucleus, plastid	92.86	76.88
GSMUA_Achr4P32940_001	Banana	cytosol	7.84	76.72
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	69.96	71.02
GSMUA_Achr6P00080_001	Banana	mitochondrion	62.73	70.99
PGSC0003DMT400044822	Potato	plastid	64.23	65.09
Solyc07g045480.2.1	Tomato	plastid	63.61	64.58
GSMUA_Achr4P32930_001	Banana	cytosol	31.98	61.63
AT5G35840.1	Thale cress	mitochondrion	56.92	58.15
CDY38546	Canola	cytosol, plastid	56.92	57.83
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	56.92	57.78
Bra039485.1-P	Field mustard	cytosol, plastid	56.83	57.74
OQU91090	Sorghum	nucleus	51.01	51.19
EER94971	Sorghum	plastid	52.42	50.51
OQU91089	Sorghum	cytosol	6.26	39.66

Protein Annotations

Gene3D:1.10.287.130	MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	Gene3D:3.30.565.10
EntrezGene:8086232	ProteinID:AAR33018.1	ProteinID:AAR33019.1	ProteinID:AAR33020.1	EnsemblPlants:EER93439	ProteinID:EER93439
ProteinID:EER93439.1	InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674
GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009585
GO:GO:0009605	GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0017006	GO:GO:0018298	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	GO:GO:0042803
GO:GO:0050896	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:His_kinase_dom	InterPro:IPR000014
InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016	InterPro:IPR036890	InterPro:PAS	InterPro:PAS-like_dom_sf
InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00512	PFAM:PF00989	PFAM:PF01590
PFAM:PF02518	PFAM:PF08446	PIRSF:PIRSF000084	PRINTS:PR01033	PFscan:PS50046	PFscan:PS50109
PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF4	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_A-E
InterPro:Phytochrome_cen-reg	UniProt:Q6S4Q9	SMART:SM00065	SMART:SM00091	SMART:SM00387	SMART:SM00388
EnsemblPlantsGene:SORBI_3001G087100	SUPFAM:SSF55781	SUPFAM:SSF55785	SUPFAM:SSF55874	unigene:Sbi.13139	TIGRFAMs:TIGR00229
UniParc:UPI0000231302	RefSeq:XP_002466441.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:6748036..6753421

Molecular Weight (calculated)

126212.0 Da

IEP (calculated)

5.994

GRAVY (calculated)

-0.112

Length

1135 amino acids

Sequence
(BLAST)

0001: MSSPLNNRGT CSRSSSARSR HSARVVAQTP VDAQLHAEFE SSQRNFDYSS SVSAAIRPSV STSTVSTYHQ TMQRGLYIQP FGCLLAVHPD TFTLLAYSEN
0101: APEMLDLTPH AVPTIDQRDA LAVGADVRTL FRSQSSVALH KAATFGEVNL LNPILVHART SGKPFYAILH RIDVGLVIDL EPVNPVDVPV TAAGALKSYK
0201: LAAKAISRLQ SLPSGNLSLL CDVLVREVSE LTGYDRVMAY KFHEDEHGEV ISECRRSDLE PYLGLHYPAT DIPQASRFLF MKNKVRMICD CSATLVKIIQ
0301: DDSLAQPLSL CGSTLRASHG CHAQYMANMG SVASLVMSVT ISNDEEEDVD TGSDQQPKGR KLWGLVVCHH TSPRFVPFPL RYACEFLLQV FGIQLNKEVE
0401: LAAQAKERHI LRTQTLLCDM LLRDAPVGIF TQSPNVMDLV KCDGAALYYQ NQLLLLGSTP SESEIKSIAT WLQENHDGST GLSTDSLVEA GYPGAAALRE
0501: VVCGMAAIKI SSKDFIFWFR SHTTKEIKWG GAKHEPVDAD DNGRKMHPRS SFKAFLEVVK WRSVPWEDVE MDAIHSLQLI LRGSLQDEDA NRNNVRSIVK
0601: APPDDTKKIQ GLLELRTVTN EMVRLIETAT APVLAVDIAG NINGWNNKAA ELTGLPVMEA IGRPLIDLVV VDSIEVVKRI LDSALQGIEE QNLEIKLKAF
0701: HEQECNGPII LMVNSCCSRD LSEKVIGVCF VGQDLTTQKM IMDKYTRIQG DYVAIVKNPS ELIPPIFMIN DLGSCLEWNK AMQKITGIQR EDVIDKLLIG
0801: EVFTLHDYGC RVKDHATLTK LSILMNAVIS GQDPEKLLFG FFDTDGKYIE SLLTVNKRIN AEGKITGAIC FLHVASPELQ HALQVQKMSE QAATNSFKEL
0901: TYIHQELRNP LNGMQFTCNL LEPSELTEEQ RKLLSSNILC QDQLKKILHD TDLESIEQCY MEMNTVEFNL EEALNTVLMQ GIPLGKEKRI SIERDWPVEI
1001: SRMYLYGDNL RLQQVLADYL ACALQFTQPA EGPIVLQVIP KKENIGSGMQ IAHLEFRIVH PAPGVPEALI QEMFRHNPEV SREGLGLYIC QKLVKTMSGT
1101: VQYLREADTS SFIILIEFPV AQLSSKRSKP STSKF

Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)

0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I

Arabidopsis Description

PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.