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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 2
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g059870.2.1
Solyc05g053410.2.1
Solyc07g045480.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G35840.1 Solyc01g059870.2.1 AT2G18790.1 15273290
AT5G35840.1 Solyc05g053410.2.1 AT2G18790.1 15273290
AT5G35840.1 Solyc01g059870.2.1 AT2G18790.1 19286967
AT5G35840.1 Solyc05g053410.2.1 AT2G18790.1 19286967
AT5G35840.1 Solyc01g059870.2.1 AT4G16250.1 19286967
AT5G35840.1 Solyc05g053410.2.1 AT4G16250.1 19286967
AT5G35840.1 Solyc07g045480.2.1 AT5G35840.1 15273290
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400044822 Potato plastid 94.81 94.64
VIT_12s0057g00980.t01 Wine grape cytosol, plastid 74.06 74.06
GSMUA_Achr4P32940_001 Banana cytosol 6.98 67.24
GSMUA_Achr6P00080_001 Banana mitochondrion 58.86 65.6
EER93439 Sorghum plastid 64.58 63.61
TraesCS5D01G401000.1 Wheat cytosol, plastid 64.58 63.39
Zm00001d034038_P002 Maize peroxisome 63.77 62.82
HORVU5Hr1G095530.2 Barley plastid 64.4 62.77
AT5G35840.1 Thale cress mitochondrion 61.99 62.38
TraesCS5A01G391300.2 Wheat cytosol, plastid 64.4 61.86
CDY06455 Canola cytosol, mitochondrion, nucleus, plastid 60.73 60.73
CDY38546 Canola cytosol, plastid 60.38 60.43
Bra039485.1-P Field mustard cytosol, plastid 60.2 60.25
TraesCS5B01G396200.1 Wheat plastid 61.36 59.55
GSMUA_Achr4P32930_001 Banana cytosol 30.68 58.23
Zm00001d018728_P001 Maize cytosol, mitochondrion 11.0 57.75
Solyc10g044670.1.1 Tomato extracellular 54.83 54.59
Solyc01g059870.2.1 Tomato cytosol 53.49 52.87
Solyc05g053410.2.1 Tomato nucleus, plastid 52.59 52.45
Zm00001d013262_P001 Maize nucleus, plastid 63.42 51.71
Os03t0752100-01 Rice cytosol 10.47 51.09
Zm00001d006712_P001 Maize peroxisome 7.69 49.14
Solyc02g071260.2.1 Tomato cytosol, plastid 48.75 47.93
Zm00001d050162_P001 Maize cytosol 5.01 40.58
Zm00001d012117_P001 Maize cytosol 5.1 39.04
Zm00001d022520_P001 Maize cytosol 5.1 39.04
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10
ProteinID:AAC49301.2InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674
GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585
GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987GO:GO:0016301GO:GO:0016740
GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0042803
GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:His_kinase_domInterPro:IPR000014
InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890InterPro:PASInterPro:PAS-like_dom_sf
InterPro:PAS_2InterPro:PAS_foldPFAM:PF00360PFAM:PF00989PFAM:PF01590PFAM:PF02518
PFAM:PF08446PIRSF:PIRSF000084PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109
PFscan:PS50112PANTHER:PTHR43719PANTHER:PTHR43719:SF4InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:Phytochrome
InterPro:Phytochrome_A-EInterPro:Phytochrome_cen-regUniProt:Q41335SMART:SM00065SMART:SM00091SMART:SM00387
SUPFAM:SSF55781SUPFAM:SSF55785SUPFAM:SSF55874EnsemblPlantsGene:Solyc07g045480.2EnsemblPlants:Solyc07g045480.2.1TIGRFAMs:TIGR00229
UniParc:UPI00000A3FE4SEG:seg::::
Description
Phytochrome [Source:UniProtKB/TrEMBL;Acc:Q41335]
Coordinates
chr7:+:58611076..58621563
Molecular Weight (calculated)
124657.0 Da
IEP (calculated)
6.483
GRAVY (calculated)
-0.121
Length
1118 amino acids
Sequence
(BLAST)
0001: MSSSSTTNKT NCSRGSSARS RRSARVIAQT PVDAKLHVEF EESEQQFDYS SSVNLSNSTS NVPSSTVSDY LQKMQRGSLI QPFGCMIAID AQNFAVIAYS
0101: ENAPEMLDLT PHAVPSIEQQ EALTFGTDVR KLFRSSGASA LEKAVSFGEL SLLNPILVHC KNSGKPFYAI LHRIEVGLVI DLEPVDPHEV PVTTAGAIKS
0201: YKLAAKAIRK LQSLPSGDIS LLCDVLVREV SHLTGYDRVM VYKFHEDEHG EVVAECRTPE LEPYLGLHYP ATDIPQASRF LFMKNKVRMI CDCLAPPIRV
0301: IQDPRLAQSL SLGGSTLRAP HGCHAQYMTN MGTVASMAMS VMINEQDDEL DSDQQVGRKL WGLVVCHHTC PRFLSFPLRY ASEFLLQVFS VQVNKEVEMA
0401: AQLKEKQILQ IQTVLCDMLL RDAPMGIVTQ SPNVMDLVKC DGAALYYRNK LWLHGVTPAE SQIRDIAEWL NESHGDSTGL NTDSLMEAGF PGASVLGDAV
0501: CGMAAVKITS KDFLFWFRSH TAKEIKWGGA KHLPGDKDDG RKMHPRSSFK AFLEVVKRRS LPWEDVEMDA IHSLQLILRG SLQDEAADCS KMIVNVPAVD
0601: TIIDRVDTLH INDMVRLVET ASMPVLAVDT SGRINGWNSK VSELTGLPVE NVIGVPLVDL VIGGTTNTIK RVLSLALQGK EEKNVEIKLR TLGPQEKVGS
0701: ISIVVNACCS RDFKQNIVGV CFTGKDVTGL KLIKDKYSRV QGDYVGIIHS PSPLIPPIFV MDEQGRCVEW NDAMHKLTGS KREEVIDQML LGEVFTVNSF
0801: GCRVKDQDTL TQLTILLNRV IAGGEGEKLF FGLFNKQDKY IEALISANKK VDDDGRVTGV LCFLHVPSPE LQYAMHVQKL SEQAAKNSLK KLAYVRLELK
0901: NPLNGINCIQ NLLKSSDLSK DQRQLLKTST MCQKQLAKII DDTDIESIEE CYTEMNSCEF NLGEVVTVVI NQVMILSQER KVQVTWDSPV EVSQLYLIGD
1001: NLRLQQVLSD FLTTAILFTP FEDSSVHFRV IPRKERIGTK MYIMHLEFRI THPSPGIPDD LIQHMFHYSR SISREGFGLY ISQKLVKIMD GTVQYLREAD
1101: RSSFIILVEF PLMEKKNN
Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)
0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
Arabidopsis Description
PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.