Factsheet for Zm00001d012117_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000219_P001
Zm00001d006712_P001
Zm00001d012117_P001
Zm00001d013262_P001
Zm00001d018728_P001
Zm00001d022520_P001
Zm00001d024238_P001
Zm00001d025231_P001
Zm00001d028905_P001
Zm00001d034038_P002
Zm00001d047632_P001
Zm00001d050162_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35840.1	Zm00001d000219_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d024238_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d025231_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d028905_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d047632_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d000219_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d024238_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d025231_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d028905_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d047632_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d000219_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d024238_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d025231_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d028905_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d047632_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d006712_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d012117_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d013262_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d018728_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d022520_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d034038_P002	AT5G35840.1	15273290
AT5G35840.1	Zm00001d050162_P001	AT5G35840.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022520_P001	Maize	cytosol	99.32	99.32
Zm00001d050162_P001	Maize	cytosol	90.41	95.65
Zm00001d018728_P001	Maize	cytosol, mitochondrion	71.23	48.83
Zm00001d034038_P002	Maize	peroxisome	71.23	9.16
Zm00001d013262_P001	Maize	nucleus, plastid	77.4	8.24
GSMUA_Achr4P32930_001	Banana	cytosol	32.88	8.15
TraesCS5D01G401000.1	Wheat	cytosol, plastid	60.96	7.81
TraesCS5B01G396200.1	Wheat	plastid	60.96	7.73
GSMUA_Achr6P00080_001	Banana	mitochondrion	52.05	7.58
TraesCS5A01G391300.2	Wheat	cytosol, plastid	59.59	7.47
HORVU5Hr1G095530.2	Barley	plastid	58.22	7.41
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	52.74	6.89
AT5G35840.1	Thale cress	mitochondrion	43.15	5.67
Zm00001d033799_P001	Maize	cytosol	43.84	5.66
Zm00001d013402_P005	Maize	nucleus	43.84	5.66
PGSC0003DMT400044822	Potato	plastid	42.47	5.54
Zm00001d028905_P001	Maize	extracellular	43.15	5.43
Zm00001d047632_P001	Maize	plastid	41.78	5.23
Bra039485.1-P	Field mustard	cytosol, plastid	39.73	5.19
CDY38546	Canola	cytosol, plastid	39.73	5.19
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	39.73	5.19
Solyc07g045480.2.1	Tomato	plastid	39.04	5.1
Zm00001d025231_P001	Maize	cytosol	2.74	2.5
Zm00001d024238_P001	Maize	cytosol	6.85	2.27
Zm00001d000219_P001	Maize	cytosol	1.37	1.8
Zm00001d006712_P001	Maize	peroxisome	0.68	0.57
Os03t0752100-01	Rice	cytosol	0.68	0.44
Zm00001d008542_P001	Maize	cytosol	0.68	0.41
GSMUA_Achr4P32940_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.450.20	MapMan:35.1	UniProt:A0A1D6G6Q3	ProteinID:AQK98871.1	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	InterPro:IPR000014	InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_fold	PFAM:PF00989
PRINTS:PR01033	PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF4	InterPro:Phytochrome	SMART:SM00091
SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI000843C852	EnsemblPlantsGene:Zm00001d012117	EnsemblPlants:Zm00001d012117_P001	EnsemblPlants:Zm00001d012117_T001

Description

Phytochrome C

Coordinates

chr8:-:168417256..168417818

Molecular Weight (calculated)

16201.2 Da

IEP (calculated)

7.349

GRAVY (calculated)

0.336

Length

146 amino acids

Sequence
(BLAST)

001: MKKIQGLLEL RTVTNEMVRL IETATARVLA VDIAGNINGW NKKAAELTGL PVMEAIGRPL IDLVVADSVE VVKQILDSAL QGIEEQNLEI KLKTFHEQEC
101: CGPVILMINS NVLSFNRTNG LAISHLLVLW YIMARICRLT FSKSTL

Best Arabidopsis Sequence Match ( AT1G09570.1 )
(BLAST)

0001: MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.