Factsheet for Zm00001d050162_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000219_P001
Zm00001d006712_P001
Zm00001d012117_P001
Zm00001d013262_P001
Zm00001d018728_P001
Zm00001d022520_P001
Zm00001d024238_P001
Zm00001d025231_P001
Zm00001d028905_P001
Zm00001d034038_P002
Zm00001d047632_P001
Zm00001d050162_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35840.1	Zm00001d000219_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d024238_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d025231_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d028905_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d047632_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d000219_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d024238_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d025231_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d028905_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d047632_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d000219_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d024238_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d025231_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d028905_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d047632_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d006712_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d012117_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d013262_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d018728_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d022520_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d034038_P002	AT5G35840.1	15273290
AT5G35840.1	Zm00001d050162_P001	AT5G35840.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022520_P001	Maize	cytosol	96.38	91.1
Zm00001d012117_P001	Maize	cytosol	95.65	90.41
Zm00001d018728_P001	Maize	cytosol, mitochondrion	73.91	47.89
Zm00001d034038_P002	Maize	peroxisome	73.19	8.9
Zm00001d013262_P001	Maize	nucleus, plastid	79.71	8.02
TraesCS5D01G401000.1	Wheat	cytosol, plastid	64.49	7.81
GSMUA_Achr4P32930_001	Banana	cytosol	33.33	7.81
TraesCS5B01G396200.1	Wheat	plastid	64.49	7.73
TraesCS5A01G391300.2	Wheat	cytosol, plastid	63.04	7.47
HORVU5Hr1G095530.2	Barley	plastid	61.59	7.41
GSMUA_Achr6P00080_001	Banana	mitochondrion	52.9	7.28
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	55.07	6.8
AT5G35840.1	Thale cress	mitochondrion	44.2	5.49
Zm00001d013402_P005	Maize	nucleus	44.93	5.48
Zm00001d033799_P001	Maize	cytosol	44.93	5.48
PGSC0003DMT400044822	Potato	plastid	44.2	5.45
Zm00001d028905_P001	Maize	extracellular	42.75	5.08
Bra039485.1-P	Field mustard	cytosol, plastid	40.58	5.01
CDY38546	Canola	cytosol, plastid	40.58	5.01
Solyc07g045480.2.1	Tomato	plastid	40.58	5.01
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	40.58	5.01
Zm00001d047632_P001	Maize	plastid	41.3	4.89
Zm00001d024238_P001	Maize	cytosol	5.07	1.59
Zm00001d000219_P001	Maize	cytosol	0.72	0.9
Zm00001d025231_P001	Maize	cytosol	0.72	0.62
Zm00001d008542_P001	Maize	cytosol	0.72	0.41
Zm00001d006712_P001	Maize	peroxisome	0.0	0.0
Os03t0752100-01	Rice	cytosol	0.0	0.0
GSMUA_Achr4P32940_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.450.20	MapMan:35.1	UniProt:A0A1D6Q065	ProteinID:AQK52044.1	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	InterPro:IPR000014	InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_fold	PFAM:PF00989
PRINTS:PR01033	PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF4	InterPro:Phytochrome	SMART:SM00091
SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI0008444875	EnsemblPlantsGene:Zm00001d050162	EnsemblPlants:Zm00001d050162_P001	EnsemblPlants:Zm00001d050162_T001

Description

Phytochrome C

Coordinates

chr4:-:69709625..69710303

Molecular Weight (calculated)

15283.0 Da

IEP (calculated)

6.519

GRAVY (calculated)

0.307

Length

138 amino acids

Sequence
(BLAST)

001: MKKIQGLLEL RIVTNEMVRL IETATARVLA VDIAGNINGW NKKAAELTGL PVMEAIGRPL IDLVVADSVE VVKQILDSAL QGIEEQNLKI KLKTFHEQEC
101: CGPVILMINS NALSFNRTNG LAISHLLVLW YIMARYAD

Best Arabidopsis Sequence Match ( AT1G09570.3 )
(BLAST)

0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.