Factsheet for Zm00001d033799_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91090	Sorghum	nucleus	96.11	96.11
Zm00001d013402_P005	Maize	nucleus	95.93	95.93
OQU91089	Sorghum	cytosol	14.94	94.41
Zm00001d008542_P001	Maize	cytosol	18.92	88.43
Os03t0719800-01	Rice	plastid	87.8	88.03
TraesCS4B01G052000.1	Wheat	mitochondrion	66.49	84.97
HORVU4Hr1G008610.2	Barley	mitochondrion	84.62	84.69
TraesCS4A01G262900.1	Wheat	mitochondrion	84.35	84.42
TraesCS4D01G052200.1	Wheat	plastid	83.64	83.42
HORVU0Hr1G023250.4	Barley	cytosol	25.2	81.9
HORVU1Hr1G068750.7	Barley	cytosol	25.02	79.72
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	65.34	68.74
VIT_14s0060g00100.t01	Wine grape	nucleus	64.63	65.04
CDY06362	Canola	cytosol, plastid	63.75	64.32
KRG90417	Soybean	nucleus	63.48	63.94
Solyc10g044670.1.1	Tomato	extracellular	63.4	63.85
Bra031672.1-P	Field mustard	cytosol, plastid	63.22	63.78
PGSC0003DMT400040772	Potato	cytosol	63.31	63.76
CDY22632	Canola	cytosol, plastid	63.04	63.49
GSMUA_Achr5P27310_001	Banana	cytosol	8.66	63.23
AT1G09570.3	Thale cress	cytosol	62.86	63.14
KRG96653	Soybean	nucleus	61.98	62.04
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	62.95	61.33
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	63.4	60.2
CDX93501	Canola	cytosol	62.95	59.23
Bra020013.1-P	Field mustard	cytosol	62.78	58.68
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	48.19	55.95
Zm00001d018728_P001	Maize	cytosol, mitochondrion	9.99	53.05
Zm00001d034038_P002	Maize	peroxisome	51.46	51.28
Zm00001d028905_P001	Maize	extracellular	48.28	47.03
Zm00001d047632_P001	Maize	plastid	47.48	46.05
Zm00001d050162_P001	Maize	cytosol	5.48	44.93
Zm00001d012117_P001	Maize	cytosol	5.66	43.84
Zm00001d022520_P001	Maize	cytosol	5.66	43.84
Zm00001d013262_P001	Maize	nucleus, plastid	50.4	41.58
Zm00001d006712_P001	Maize	peroxisome	4.42	28.57
Zm00001d000219_P001	Maize	cytosol	2.3	23.42
Zm00001d024238_P001	Maize	cytosol	9.11	23.41
Zm00001d025231_P001	Maize	cytosol	3.27	23.12

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:103643916	MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40
Gene3D:3.30.565.10	ProteinID:AAP06787.1	InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0003674	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584
GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0017006
GO:GO:0018298	GO:GO:0019538	GO:GO:0038023	GO:GO:0042803	GO:GO:0050896	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:His_kinase_dom	InterPro:IPR000014	InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016
InterPro:IPR036890	ProteinID:ONM08663.1	ProteinID:ONM08664.1	ProteinID:ONM08665.1	ProteinID:ONM08666.1	ProteinID:ONM08668.1
ProteinID:ONM08669.1	ProteinID:ONM08670.1	ProteinID:ONM08672.1	ProteinID:ONM08673.1	ProteinID:ONM08674.1	ProteinID:ONM08676.1
ProteinID:ONM08677.1	ProteinID:ONM08679.1	InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_2	InterPro:PAS_fold
PFAM:PF00360	PFAM:PF00989	PFAM:PF01590	PFAM:PF02518	PFAM:PF08446	PIRSF:PIRSF000084
PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109	PFscan:PS50112	PANTHER:PTHR43719
PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_A-E	InterPro:Phytochrome_cen-reg
UniProt:Q6XFQ4	SMART:SM00065	SMART:SM00091	SMART:SM00387	SUPFAM:SSF55781	SUPFAM:SSF55785
SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI00003504BF	EnsemblPlantsGene:Zm00001d033799	EnsemblPlants:Zm00001d033799_P001	EnsemblPlants:Zm00001d033799_T001
SEG:seg	:	:	:	:	:

Description

phytochromeA1 phytochromeA1

Coordinates

chr1:-:274078397..274085718

Molecular Weight (calculated)

125104.0 Da

IEP (calculated)

5.861

GRAVY (calculated)

-0.160

Length

1131 amino acids

Sequence
(BLAST)

0001: MSSLRPAQSS SSSSRTRQSS QARILAQTTL DAELNAEYEE SGDSFDYSKL VEAQRSTPPE QQGRSGKVIA YLQHIQRGKL IQPFGCLLAL DEKSFRVIAF
0101: SENAPEMLTT VSHAVPNVDD PPKLGIGTNV RSLFTDPGAT ALQKALGFAD VSLLNPILVQ CKTSGKPFYA IVHRATGCLV VDFEPVKPTE FPATAAGALQ
0201: SYKLAAKAIS KIQSLPGGSM QALCNTVVKE VFDLTGYDRV MAYKFHEDEH GEVFAEITKP GIEPYLGLHY PATDIPQAAR FLFMKNKVRM ICDCRARSVK
0301: IIEDEALSID ISLCGSTLRA PHSCHLQYME NMNSIASLVM AVVVNENEDD DEPESEQPPQ QQKRKKLWGL IVCHHESPRY VPFPLRYACE FLAQVFAVHV
0401: NKEFELEKQI REKSILRMQT MLSDMLFKES SPLSIVSGSP NIMDLVKCDG AALLYGDKVW RLQTAPTESQ IRDIAFWLSE VHGDSTGLST DSLQDAGYPG
0501: AASLGDMICG MAVAKITSKD ILFWFRSHTA AEIKWGGAKH DPSDEDDSRR MHPRLSFKAF LEVVKMKSLP WSDYEMDAIH SLQLILRGTL NDALKPAQSS
0601: GLDNQIGDLK LDGLAELQAV TSEMVRLMET ATVPILAVDG NGLVNGWNQK VADLSGLRVD EAIGRHILTL VEDSSVPIVQ RMLYLALQGR EEKEVRFELK
0701: THGSKRDDGP VILVVNACAS RDMHDHVVGV CFVAQDMTVH KLVMDKFTRV EGDYRAIIHN PNPLIPPIFG ADQFGWCSEW NAAMTKLTGW HRDEVIDRML
0801: LGEVFDSSNA SCLLKSKDAF VRLCIIINSA LAGEEAEKAP IGFFDRDGKY IECLLSVNRK VNADGVVTGV FCFIHVPSDD LQHALHVQQA SEQTALRRLK
0901: AFSYMRHAID KPLSGMLYSR ETLKGTDLDE EQMRQVRVAD NCHRQLNKIL ADLDQDNITD KSSCLDLDMA EFVLQDVVVS AVSQVLIGCQ GKGIRVACNL
1001: PERSMKQKVY GDGIRLQQIL SDFLFVSVKF SPAGGSVDIS SKLTKNSIGE NLHLIDFELR IKHQGAGVPA EILSQMYGED NREQSEEGLS LLVSRNLLRL
1101: MNGDIRHLRE AGMSTFILTA ELAAAPSAAG H

Best Arabidopsis Sequence Match ( AT1G09570.1 )
(BLAST)

0001: MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.