Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93501 | Canola | cytosol | 95.21 | 95.84 |
| AT1G09570.3 | Thale cress | cytosol | 88.18 | 94.76 |
| Bra031672.1-P | Field mustard | cytosol, plastid | 86.45 | 93.31 |
| VIT_14s0060g00100.t01 | Wine grape | nucleus | 75.95 | 81.76 |
| PGSC0003DMT400040772 | Potato | cytosol | 73.39 | 79.07 |
| Solyc10g044670.1.1 | Tomato | extracellular | 73.39 | 79.07 |
| KRG90417 | Soybean | nucleus | 72.73 | 78.36 |
| KRH33709 | Soybean | endoplasmic reticulum, golgi, plastid | 72.81 | 73.97 |
| KRG96653 | Soybean | nucleus | 69.01 | 73.89 |
| GSMUA_Achr8P06130_001 | Banana | cytosol, mitochondrion | 60.58 | 68.19 |
| HORVU0Hr1G023250.4 | Barley | cytosol | 19.17 | 66.67 |
| HORVU1Hr1G068750.7 | Barley | cytosol | 19.34 | 65.92 |
| TraesCS4B01G052000.1 | Wheat | mitochondrion | 48.1 | 65.76 |
| KRH68382 | Soybean | endoplasmic reticulum, plastid, vacuole | 52.73 | 65.5 |
| GSMUA_Achr5P27310_001 | Banana | cytosol | 8.35 | 65.16 |
| OQU91090 | Sorghum | nucleus | 59.09 | 63.22 |
| Os03t0719800-01 | Rice | plastid | 58.68 | 62.94 |
| Zm00001d013402_P005 | Maize | nucleus | 58.76 | 62.86 |
| Zm00001d033799_P001 | Maize | cytosol | 58.68 | 62.78 |
| HORVU4Hr1G008610.2 | Barley | mitochondrion | 57.77 | 61.86 |
| TraesCS4A01G262900.1 | Wheat | mitochondrion | 57.27 | 61.33 |
| TraesCS4D01G052200.1 | Wheat | plastid | 57.36 | 61.2 |
| Zm00001d008542_P001 | Maize | cytosol | 12.15 | 60.74 |
| OQU91089 | Sorghum | cytosol | 8.26 | 55.87 |
| Bra039485.1-P | Field mustard | cytosol, plastid | 47.6 | 51.57 |
| Bra022192.1-P | Field mustard | cytosol | 47.69 | 48.41 |
| Bra013286.1-P | Field mustard | cytosol | 43.31 | 47.04 |
| Bra001650.1-P | Field mustard | cytosol | 4.63 | 36.6 |
Protein Annotations
| Gene3D:1.10.287.130 | MapMan:26.1.1.1 | Gene3D:3.30.450.20 | Gene3D:3.30.450.270 | Gene3D:3.30.450.40 | Gene3D:3.30.565.10 |
| ProteinID:AAP92380 | ProteinID:AAP92380.1 | EMBL:AY324836 | EnsemblPlantsGene:Bra020013 | EnsemblPlants:Bra020013.1 | EnsemblPlants:Bra020013.1-P |
| ncoils:Coil | InterPro:GAF | InterPro:GAF-like_dom_sf | GO:GO:0000155 | GO:GO:0000160 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009584 | GO:GO:0009605 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0023014 |
| GO:GO:0038023 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:HisK_dim/P | InterPro:His_kinase_dom | InterPro:IPR000014 |
| InterPro:IPR005467 | InterPro:IPR016132 | InterPro:IPR029016 | InterPro:IPR036890 | UniProt:M4DU20 | InterPro:PAS |
| InterPro:PAS-like_dom_sf | InterPro:PAS_2 | InterPro:PAS_fold | PFAM:PF00360 | PFAM:PF00989 | PFAM:PF01590 |
| PFAM:PF02518 | PFAM:PF08446 | PRINTS:PR01033 | ScanProsite:PS00245 | PFscan:PS50046 | PFscan:PS50109 |
| PFscan:PS50112 | PANTHER:PTHR43719 | PANTHER:PTHR43719:SF13 | InterPro:Phyto_chromo_BS | InterPro:Phyto_chromo_attachment | InterPro:Phytochrome |
| InterPro:Phytochrome_cen-reg | SMART:SM00065 | SMART:SM00091 | SMART:SM00387 | SMART:SM00388 | SUPFAM:SSF55781 |
| SUPFAM:SSF55785 | SUPFAM:SSF55874 | TIGRFAMs:TIGR00229 | UniParc:UPI000253E8BB | SEG:seg | : |
Description
AT1G09570 (E=0.0) PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer
Coordinates
chrA06:-:3277123..3287675
Molecular Weight (calculated)
134113.0 Da
IEP (calculated)
6.059
GRAVY (calculated)
-0.141
Length
1210 amino acids
Sequence
(BLAST)
(BLAST)
0001: MACREALPVG RESSEFLTTL EDQHLSAEDG LGTWEPPEDQ HSNVTIICQY CRAFLLAVTI YKKKHPINRF LLALFSERQI GSDPGENMSG SRPSHSSEGS
0101: RRSRHSARII AQTTVDAKLH ADFEESGSCF DYSTSVRVTG PVVENQPPRS DKVTTTYLHH IQKGKLIQPF GCLLALDEKT FKVIAYSENA AELLTMASHA
0201: VPSVGEQGAL GIGTDIRSLF TAPSASALQK ALGFGDVSLL NPILVHCKTS AKPFYAIVHR VTGSIIVDFE PVKPYEVPMT AAGALQSYKL AAKAITRLQS
0301: LPSGSMERLC DTMVQEVFEL TGYDRVMAYK FHDDDHGEVV SEVTKPGLEP YLGLHYPATD IPQAARFLFM KNKVRMIVDC NAKHVTVLQD EKLSSDLTLC
0401: GSTLRAPHSC HLQYMANMDS IASLVMAVVV NEEDGEGDAA APDSTAPQKR KRLWGLVVCH NTTPRFVPFP LRYACEFLAQ VFAIHVNKEV ELENQIVEKN
0501: ILRTQTLLCD MLMRDAPLGI VSQSPNIMDL VKCDGAALLY KDKVWKLGIT PSEFHLQEIA SWLCEYHTDS TGLSTDSLHD AGFPRALALG DSVCGMAAVR
0601: ISSKDMIFWF RSHTAGEVRW GGAKHDPDDR DDARRMHPRS SFKAFLEVVK TRSLPWKDYE MDAIHSLQLI LRNAFKDGEA TDVNTKIIHS KLNDLKIDGI
0701: QELEAVTSEM VRLIETATVP ILAVDSDGLV NGWNTKISEL TGLPVDEAIG KHLLTLVEDS SVEIVKRMLE NALEGTEEQN VQFEIKTHLS RADAGPISLV
0801: VNACASRDLH ENVVGVCFVA HDLTGQKTVM DKFTRIEGDY KAIIQNPNPL IPPIFGTDEF GWCTEWNPAM SKLTGLKREE VMDKMLLGEV FGTQKSCCRL
0901: KNQEAFVNLG IVLNNAVTSQ EAEKVPFAFF TRGGKYVECL LCVSKKLDRE GVVTGVFCFL QLASHELQQA LHVQRLAERT ALKRLKALAY IKRQIRNPLS
1001: GIMFTRKMME VSELGPEQRR ILQTSALCQK QLSKILDDSD LESIIEGCLD LEMKEFSLNE VLTASTSQVM MKSNGKSVRI TNDTGEEVMS DTLYGDSIRL
1101: QQVLADFMLM SVNFTPSGGE LTVTASLRKD QLGRSVHLAY LEIRITHTGA GLPEFLLNQM FGTEEDMSEE GLSLMVSRKL VKLMNGDVQY LRQAGKSSFI
1201: ITAELAAANK
0101: RRSRHSARII AQTTVDAKLH ADFEESGSCF DYSTSVRVTG PVVENQPPRS DKVTTTYLHH IQKGKLIQPF GCLLALDEKT FKVIAYSENA AELLTMASHA
0201: VPSVGEQGAL GIGTDIRSLF TAPSASALQK ALGFGDVSLL NPILVHCKTS AKPFYAIVHR VTGSIIVDFE PVKPYEVPMT AAGALQSYKL AAKAITRLQS
0301: LPSGSMERLC DTMVQEVFEL TGYDRVMAYK FHDDDHGEVV SEVTKPGLEP YLGLHYPATD IPQAARFLFM KNKVRMIVDC NAKHVTVLQD EKLSSDLTLC
0401: GSTLRAPHSC HLQYMANMDS IASLVMAVVV NEEDGEGDAA APDSTAPQKR KRLWGLVVCH NTTPRFVPFP LRYACEFLAQ VFAIHVNKEV ELENQIVEKN
0501: ILRTQTLLCD MLMRDAPLGI VSQSPNIMDL VKCDGAALLY KDKVWKLGIT PSEFHLQEIA SWLCEYHTDS TGLSTDSLHD AGFPRALALG DSVCGMAAVR
0601: ISSKDMIFWF RSHTAGEVRW GGAKHDPDDR DDARRMHPRS SFKAFLEVVK TRSLPWKDYE MDAIHSLQLI LRNAFKDGEA TDVNTKIIHS KLNDLKIDGI
0701: QELEAVTSEM VRLIETATVP ILAVDSDGLV NGWNTKISEL TGLPVDEAIG KHLLTLVEDS SVEIVKRMLE NALEGTEEQN VQFEIKTHLS RADAGPISLV
0801: VNACASRDLH ENVVGVCFVA HDLTGQKTVM DKFTRIEGDY KAIIQNPNPL IPPIFGTDEF GWCTEWNPAM SKLTGLKREE VMDKMLLGEV FGTQKSCCRL
0901: KNQEAFVNLG IVLNNAVTSQ EAEKVPFAFF TRGGKYVECL LCVSKKLDRE GVVTGVFCFL QLASHELQQA LHVQRLAERT ALKRLKALAY IKRQIRNPLS
1001: GIMFTRKMME VSELGPEQRR ILQTSALCQK QLSKILDDSD LESIIEGCLD LEMKEFSLNE VLTASTSQVM MKSNGKSVRI TNDTGEEVMS DTLYGDSIRL
1101: QQVLADFMLM SVNFTPSGGE LTVTASLRKD QLGRSVHLAY LEIRITHTGA GLPEFLLNQM FGTEEDMSEE GLSLMVSRKL VKLMNGDVQY LRQAGKSSFI
1201: ITAELAAANK
0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
Arabidopsis Description
PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.