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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • plastid 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000436.1-P nucleus
Bra001650.1-P
Bra002468.1-P
Bra003798.1-P cytosol
Bra004489.1-P nucleus
Bra004691.1-P cytosol
Bra004898.1-P
Bra005541.1-P
Bra008698.1-P
Bra013286.1-P
Bra013458.1-P
Bra014002.1-P
Bra015313.1-P
Bra016300.1-P nucleus
Bra016879.1-P cytosol
Bra017406.1-P
Bra017567.1-P
Bra018439.1-P
Bra019932.1-P
Bra020926.1-P
Bra022192.1-P
Bra023518.1-P
Bra024353.1-P
Bra024800.1-P
Bra025028.1-P
Bra026572.1-P
Bra030568.1-P
Bra031714.1-P
Bra031881.1-P
Bra032750.1-P
Bra034295.1-P cytosol
Bra036963.1-P
Bra037495.1-P cytosol, nucleus
Bra038805.1-P
Bra039485.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18790.1 Bra015313.1-P AT1G04400.1 11089975
AT2G18790.1 Bra030568.1-P AT1G04400.1 11089975
AT2G18790.1 Bra018439.1-P AT1G10470.1 11691995
AT2G18790.1 Bra019932.1-P AT1G10470.1 11691995
AT2G18790.1 Bra031714.1-P AT1G10470.1 11691995
AT2G18790.1 Bra036963.1-P AT1G10470.1 11691995
AT2G18790.1 Bra016300.1-P AT1G26960.1 23964902
AT2G18790.1 Bra016300.1-P AT1G26960.1 23964902
AT2G18790.1 Bra003798.1-P AT1G74490.1 23964902
AT2G18790.1 Bra003798.1-P AT1G74490.1 23964902
AT2G18790.1 Bra017406.1-P AT2G02950.1 10348744
AT2G18790.1 Bra024800.1-P AT2G02950.1 10348744
AT2G18790.1 Bra026572.1-P AT2G02950.1 10348744
AT2G18790.1 Bra001650.1-P AT2G18790.1 15273290
AT2G18790.1 Bra022192.1-P AT2G18790.1 15273290
AT2G18790.1 Bra001650.1-P AT2G18790.1 19286967
AT2G18790.1 Bra022192.1-P AT2G18790.1 19286967
AT2G18790.1 Bra034295.1-P AT2G26190.1 23964902
AT2G18790.1 Bra034295.1-P AT2G26190.1 23964902
AT2G18790.1 Bra005541.1-P AT2G32950.1 11752373
AT2G18790.1 Bra004691.1-P AT2G42400.1 22904146
AT2G18790.1 Bra016879.1-P AT2G42400.1 22904146
AT2G18790.1 Bra004691.1-P AT2G42400.1 22904146
AT2G18790.1 Bra016879.1-P AT2G42400.1 22904146
AT2G18790.1 Bra004898.1-P AT2G45290.1 23964902
AT2G18790.1 Bra000436.1-P AT2G46970.1 23964902
AT2G18790.1 Bra004489.1-P AT2G46970.1 23964902
AT2G18790.1 Bra000436.1-P AT2G46970.1 23964902
AT2G18790.1 Bra004489.1-P AT2G46970.1 23964902
AT2G18790.1 Bra014002.1-P AT4G13940.1 23964902
AT2G18790.1 Bra032750.1-P AT4G13940.1 23964902
AT2G18790.1 Bra013286.1-P AT4G18130.1 15273290
AT2G18790.1 Bra013286.1-P AT4G18130.1 19286967
AT2G18790.1 Bra013458.1-P AT4G20360.1 23964902
AT2G18790.1 Bra020926.1-P AT4G20360.1 23964902
AT2G18790.1 Bra038805.1-P AT4G20360.1 23964902
AT2G18790.1 Bra008698.1-P AT5G15450.1 23964902
AT2G18790.1 Bra023518.1-P AT5G15450.1 23964902
AT2G18790.1 Bra039485.1-P AT5G35840.1 15273290
AT2G18790.1 Bra039485.1-P AT5G35840.1 19286967
AT2G18790.1 Bra017567.1-P AT5G46240.1 23964902
AT2G18790.1 Bra025028.1-P AT5G46240.1 23964902
AT2G18790.1 Bra037495.1-P AT5G48300.1 23964902
AT2G18790.1 Bra037495.1-P AT5G48300.1 23964902
AT2G18790.1 Bra037495.1-P AT5G48300.1 23964902
AT2G18790.1 Bra002468.1-P AT5G60600.1 23964902
AT2G18790.1 Bra024353.1-P AT5G65090.1 23964902
AT2G18790.1 Bra031881.1-P AT5G65090.1 23964902
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX82382 Canola cytosol 98.04 81.52
Zm00001d025231_P001 Maize cytosol 54.25 51.88
Zm00001d000219_P001 Maize cytosol 32.03 44.14
Zm00001d024238_P001 Maize cytosol 58.82 20.45
AT2G18790.1 Thale cress nucleus 87.58 11.43
Bra022192.1-P Field mustard cytosol 87.58 11.24
VIT_05s0077g00940.t01 Wine grape cytosol 69.28 9.39
KRH36969 Soybean nucleus 66.01 8.88
PGSC0003DMT400061712 Potato cytosol, plastid 64.71 8.76
Solyc01g059870.2.1 Tomato cytosol 64.71 8.75
GSMUA_Achr3P08340_001 Banana nucleus 62.09 8.72
Os03t0309200-01 Rice nucleus, plasma membrane 62.75 8.57
KRH11936 Soybean nucleus 63.4 8.44
TraesCS4D01G183400.1 Wheat plastid 62.75 8.25
TraesCS4B01G182400.1 Wheat plastid 62.75 8.23
TraesCS4A01G122500.2 Wheat plastid 62.75 8.23
HORVU4Hr1G053400.1 Barley plasma membrane 62.75 8.22
PGSC0003DMT400069974 Potato mitochondrion 59.48 8.09
Zm00001d047632_P001 Maize plastid 61.44 8.06
Solyc05g053410.2.1 Tomato nucleus, plastid 58.82 8.03
Zm00001d028905_P001 Maize extracellular 60.78 8.01
EER94971 Sorghum plastid 60.78 7.89
Bra039485.1-P Field mustard cytosol, plastid 41.18 5.64
Bra013286.1-P Field mustard cytosol 38.56 5.3
Bra031672.1-P Field mustard cytosol, plastid 36.6 5.0
Bra020013.1-P Field mustard cytosol 36.6 4.63
Protein Annotations
EnsemblPlants:Bra001650.1EnsemblPlants:Bra001650.1-PEnsemblPlantsGene:Bra001650Gene3D:3.30.565.10InterPro:HATPase_CInterPro:HATPase_C_sf
InterPro:His_kinase_domInterPro:IPR005467InterPro:IPR036890PANTHER:PTHR43719PANTHER:PTHR43719:SF12PFAM:PF02518
PFscan:PS50109SMART:SM00387SUPFAM:SSF55874UniParc:UPI0002540AD7UniProt:M4CBS0MapMan:35.1
Description
AT2G18790 (E=1e-037) PHYB, HY3, OOP1 | PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer
Coordinates
chrA03:+:17690278..17691120
Molecular Weight (calculated)
17456.5 Da
IEP (calculated)
4.486
GRAVY (calculated)
0.116
Length
153 amino acids
Sequence
(BLAST)
001: MDLERLEDGS FELVREEFYL GSIINAVVSQ AMFLLRERSL QLIRDIPEEI KSIAVFGDQT RTQQLLAEFL LSIIRMACPG EGLPPELVRD MFHSSRWTSP
101: EGLGLSVCRK ILKLMNGEVQ YIRESERSYF LIILELPVPP LSTASGDMML MMT
Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.