Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g059870.2.1 | Tomato | cytosol | 95.66 | 95.58 |
VIT_05s0077g00940.t01 | Wine grape | cytosol | 86.46 | 86.54 |
PGSC0003DMT400069974 | Potato | mitochondrion | 81.24 | 81.6 |
KRH36969 | Soybean | nucleus | 80.89 | 80.39 |
KRH11936 | Soybean | nucleus | 80.18 | 78.85 |
Os03t0309200-01 | Rice | nucleus, plasma membrane | 74.87 | 75.54 |
AT2G18790.1 | Thale cress | nucleus | 77.7 | 74.91 |
Bra022192.1-P | Field mustard | cytosol | 77.88 | 73.83 |
TraesCS4D01G183400.1 | Wheat | plastid | 75.49 | 73.28 |
Zm00001d028905_P001 | Maize | extracellular | 75.22 | 73.21 |
TraesCS4B01G182400.1 | Wheat | plastid | 75.49 | 73.16 |
TraesCS4A01G122500.2 | Wheat | plastid | 75.4 | 73.07 |
HORVU4Hr1G053400.1 | Barley | plasma membrane | 75.49 | 73.03 |
GSMUA_Achr3P08340_001 | Banana | nucleus | 70.09 | 72.73 |
EER94971 | Sorghum | plastid | 75.75 | 72.67 |
AT4G16250.1 | Thale cress | plastid | 74.42 | 72.25 |
Zm00001d047632_P001 | Maize | plastid | 74.42 | 72.13 |
Bra001650.1-P | Field mustard | cytosol | 8.76 | 64.71 |
PGSC0003DMT400007944 | Potato | cytosol, plastid | 60.0 | 59.68 |
Zm00001d025231_P001 | Maize | cytosol | 8.23 | 58.12 |
Zm00001d000219_P001 | Maize | cytosol | 5.4 | 54.95 |
PGSC0003DMT400044822 | Potato | plastid | 53.98 | 54.46 |
PGSC0003DMT400040772 | Potato | cytosol | 53.36 | 53.7 |
CDY42549 | Canola | cytosol | 9.47 | 47.35 |
Zm00001d024238_P001 | Maize | cytosol | 13.45 | 34.55 |
Protein Annotations
Gene3D:1.10.287.130 | EntrezGene:102577925 | MapMan:26.1.1.1 | MapMan:26.4.1.2 | Gene3D:3.30.450.20 | Gene3D:3.30.450.270 |
Gene3D:3.30.450.40 | Gene3D:3.30.565.10 | ProteinID:ABC72086 | ProteinID:ABC72086.1 | ProteinID:CAA74908 | ProteinID:CAA74908.1 |
EMBL:DQ342235 | InterPro:GAF | InterPro:GAF-like_dom_sf | GO:GO:0000155 | GO:GO:0000160 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007154 |
GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009584 | GO:GO:0009585 |
GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009881 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 |
GO:GO:0017006 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0023014 | GO:GO:0038023 | GO:GO:0042803 |
GO:GO:0050896 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:HisK_dim/P | InterPro:HisK_dim/P_sf | InterPro:His_kinase_dom |
InterPro:IPR000014 | InterPro:IPR005467 | InterPro:IPR016132 | InterPro:IPR029016 | InterPro:IPR036890 | UniProt:M1C7W5 |
InterPro:PAS | InterPro:PAS-like_dom_sf | InterPro:PAS_2 | InterPro:PAS_fold | PFAM:PF00360 | PFAM:PF00512 |
PFAM:PF00989 | PFAM:PF01590 | PFAM:PF02518 | PFAM:PF08446 | EnsemblPlantsGene:PGSC0003DMG400024017 | PGSC:PGSC0003DMG400024017 |
EnsemblPlants:PGSC0003DMT400061712 | PIRSF:PIRSF000084 | PRINTS:PR01033 | ScanProsite:PS00245 | PFscan:PS50046 | PFscan:PS50109 |
PFscan:PS50112 | PANTHER:PTHR43719 | PANTHER:PTHR43719:SF12 | InterPro:Phyto_chromo_BS | InterPro:Phyto_chromo_attachment | InterPro:Phytochrome |
InterPro:Phytochrome_A-E | InterPro:Phytochrome_cen-reg | SMART:SM00065 | SMART:SM00091 | SMART:SM00387 | SMART:SM00388 |
SUPFAM:SSF47384 | SUPFAM:SSF55781 | SUPFAM:SSF55785 | SUPFAM:SSF55874 | TIGRFAMs:TIGR00229 | UniParc:UPI0002957EBA |
RefSeq:XP_006358209.1 | EMBL:Y14572 | SEG:seg | : | : | : |
Description
Phytochrome B [Source:PGSC_GENE;Acc:PGSC0003DMG400024017]
Coordinates
chr1:+:45754365..45761834
Molecular Weight (calculated)
125372.0 Da
IEP (calculated)
5.921
GRAVY (calculated)
-0.141
Length
1130 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASGSRTKHS HHSSSQAQSS GTSNVNYKDS ISKAIAQYTA DARLHAVFEQ SGESGKFFDY SQSVKTTTQS VPERQITAYL TKIQRGGHIQ PFGCMIAVDE
0101: ASFRVIAYSE NACEMLSLTP QSVPSLEKCE ILTIGTDVRT LFTPSSSVLL ERAFGAREIT LLNPIWIHSK NSGKPFYAIL HRVDVGIVID LEPARTEDPA
0201: LSIAGAVQSQ KLAVRAISHL QSLPGGDIKL LCDTVVESVR ELTGYDRVMV YKFHEDEHGE VVAESKRSDL EPYIGLHYPA TDIPQASRFL FKQNRVRMIV
0301: DCHATPVRVT QDESLMQPLC LVGSTLRAPH GCHAQYMANM GSIASLTLAV IINGNDEEAV GGGRNSMRLW GLVVGHHTSV RSIPFPLRYA CEFLMQAFGL
0401: QLNMELQLAS QLSEKHVLRT QTLLCDMLLR DSPPGIVTQS PSIMDLVKCD GAALYYQGKY YPLGVTPTEA QIKDIVEWLL AYHGDSTGLS TDSLADAGYP
0501: GAASLGDAVC GMAVAYITSK DFLFWFRSHT AKEIKWGGAK HHPEDKDDGQ RMHPRSSFKA FLEVVKSRSS PWENAEMDAI HSLQLILRDS FKDAEASNSK
0601: AIVHAHLGEM ELQGIDELSS VAREMVRLIE TATAPIFAVD VEGHINGWNA KVAELTGVSV EEAMGKSLVH DLVYKESQET AEKLLYNALR GEEDKNVEIK
0701: LRTFGAEQLE KAVFVVVNAC ASKDYTNNIV GVCFVGQDVT GEKVVMDKFI NIQGDYKAIV HSPNPLIPPI FASDENTCCS EWNTAMEKLT GWSRGEIVGK
0801: MLVGEIFGSC CRLKGPDAMT KFMIVLHNAI GGQDTDKFPF SFFDRNGKYV QALLTANKRV NMEGDTIGAF CFIQIASPEL QQALRVQRQQ EKKCYSQMKE
0901: LAYICQEIKS PLNGIRFTNS LLEATNLTEN QKQYLETSAA CERQMSKIIR DVDLENIEDG SLTLEKEDFF LGSVIDAVVS QVMLLLREKG VQLIRDIPEE
1001: IKTLTVHGDQ VRIQQVLADF LLNMVRYAPS PDGWVEIQLR PSMMPISDGV TVVHIDLRII CPGEGLPPEL VQDMFHSSRW VTQEGLGLSM CRKMLKLMNG
1101: EIQYIRESER CYFLIILDLP MTRKGPKCVG
0101: ASFRVIAYSE NACEMLSLTP QSVPSLEKCE ILTIGTDVRT LFTPSSSVLL ERAFGAREIT LLNPIWIHSK NSGKPFYAIL HRVDVGIVID LEPARTEDPA
0201: LSIAGAVQSQ KLAVRAISHL QSLPGGDIKL LCDTVVESVR ELTGYDRVMV YKFHEDEHGE VVAESKRSDL EPYIGLHYPA TDIPQASRFL FKQNRVRMIV
0301: DCHATPVRVT QDESLMQPLC LVGSTLRAPH GCHAQYMANM GSIASLTLAV IINGNDEEAV GGGRNSMRLW GLVVGHHTSV RSIPFPLRYA CEFLMQAFGL
0401: QLNMELQLAS QLSEKHVLRT QTLLCDMLLR DSPPGIVTQS PSIMDLVKCD GAALYYQGKY YPLGVTPTEA QIKDIVEWLL AYHGDSTGLS TDSLADAGYP
0501: GAASLGDAVC GMAVAYITSK DFLFWFRSHT AKEIKWGGAK HHPEDKDDGQ RMHPRSSFKA FLEVVKSRSS PWENAEMDAI HSLQLILRDS FKDAEASNSK
0601: AIVHAHLGEM ELQGIDELSS VAREMVRLIE TATAPIFAVD VEGHINGWNA KVAELTGVSV EEAMGKSLVH DLVYKESQET AEKLLYNALR GEEDKNVEIK
0701: LRTFGAEQLE KAVFVVVNAC ASKDYTNNIV GVCFVGQDVT GEKVVMDKFI NIQGDYKAIV HSPNPLIPPI FASDENTCCS EWNTAMEKLT GWSRGEIVGK
0801: MLVGEIFGSC CRLKGPDAMT KFMIVLHNAI GGQDTDKFPF SFFDRNGKYV QALLTANKRV NMEGDTIGAF CFIQIASPEL QQALRVQRQQ EKKCYSQMKE
0901: LAYICQEIKS PLNGIRFTNS LLEATNLTEN QKQYLETSAA CERQMSKIIR DVDLENIEDG SLTLEKEDFF LGSVIDAVVS QVMLLLREKG VQLIRDIPEE
1001: IKTLTVHGDQ VRIQQVLADF LLNMVRYAPS PDGWVEIQLR PSMMPISDGV TVVHIDLRII CPGEGLPPEL VQDMFHSSRW VTQEGLGLSM CRKMLKLMNG
1101: EIQYIRESER CYFLIILDLP MTRKGPKCVG
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.