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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plastid

Predictor Summary:
  • nucleus 3
  • plastid 4
  • mitochondrion 1
  • cytosol 2
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18790.1 PGSC0003DMT400044219 AT1G04400.1 11089975
AT2G18790.1 PGSC0003DMT400058306 AT1G10470.1 11691995
AT2G18790.1 PGSC0003DMT400061712 AT2G18790.1 15273290
AT2G18790.1 PGSC0003DMT400069974 AT2G18790.1 15273290
AT2G18790.1 PGSC0003DMT400061712 AT2G18790.1 19286967
AT2G18790.1 PGSC0003DMT400069974 AT2G18790.1 19286967
AT2G18790.1 PGSC0003DMT400021177 AT2G26190.1 23964902
AT2G18790.1 PGSC0003DMT400021177 AT2G26190.1 23964902
AT2G18790.1 PGSC0003DMT400036075 AT2G32950.1 11752373
AT2G18790.1 PGSC0003DMT400019358 AT2G34590.1 23964902
AT2G18790.1 PGSC0003DMT400080554 AT2G34590.1 23964902
AT2G18790.1 PGSC0003DMT400018062 AT2G45290.1 23964902
AT2G18790.1 PGSC0003DMT400056799 AT2G45290.1 23964902
AT2G18790.1 PGSC0003DMT400047079 AT2G46970.1 23964902
AT2G18790.1 PGSC0003DMT400047079 AT2G46970.1 23964902
AT2G18790.1 PGSC0003DMT400011624 AT4G13940.1 23964902
AT2G18790.1 PGSC0003DMT400061712 AT4G16250.1 15273290
AT2G18790.1 PGSC0003DMT400069974 AT4G16250.1 15273290
AT2G18790.1 PGSC0003DMT400061712 AT4G16250.1 19286967
AT2G18790.1 PGSC0003DMT400069974 AT4G16250.1 19286967
AT2G18790.1 PGSC0003DMT400007944 AT4G18130.1 15273290
AT2G18790.1 PGSC0003DMT400007944 AT4G18130.1 19286967
AT2G18790.1 PGSC0003DMT400046837 AT4G20360.1 23964902
AT2G18790.1 PGSC0003DMT400092196 AT4G20360.1 23964902
AT2G18790.1 PGSC0003DMT400003652 AT5G15450.1 23964902
AT2G18790.1 PGSC0003DMT400044822 AT5G35840.1 15273290
AT2G18790.1 PGSC0003DMT400044822 AT5G35840.1 19286967
AT2G18790.1 PGSC0003DMT400024866 AT5G46240.1 23964902
AT2G18790.1 PGSC0003DMT400024968 AT5G46240.1 23964902
AT2G18790.1 PGSC0003DMT400054318 AT5G46240.1 23964902
AT2G18790.1 PGSC0003DMT400054339 AT5G46240.1 23964902
AT2G18790.1 PGSC0003DMT400079823 AT5G48300.1 23964902
AT2G18790.1 PGSC0003DMT400097320 AT5G48300.1 23964902
AT2G18790.1 PGSC0003DMT400079823 AT5G48300.1 23964902
AT2G18790.1 PGSC0003DMT400097320 AT5G48300.1 23964902
AT2G18790.1 PGSC0003DMT400079823 AT5G48300.1 23964902
AT2G18790.1 PGSC0003DMT400097320 AT5G48300.1 23964902
AT2G18790.1 PGSC0003DMT400020795 AT5G60600.1 23964902
AT2G18790.1 PGSC0003DMT400053156 AT5G65090.1 23964902
AT4G16250.1 PGSC0003DMT400061712 AT2G18790.1 15273290
AT4G16250.1 PGSC0003DMT400069974 AT2G18790.1 15273290
AT4G16250.1 PGSC0003DMT400061712 AT2G18790.1 19286967
AT4G16250.1 PGSC0003DMT400069974 AT2G18790.1 19286967
AT4G16250.1 PGSC0003DMT400061712 AT4G16250.1 15273290
AT4G16250.1 PGSC0003DMT400069974 AT4G16250.1 15273290
AT4G16250.1 PGSC0003DMT400061712 AT4G16250.1 19286967
AT4G16250.1 PGSC0003DMT400069974 AT4G16250.1 19286967
AT4G16250.1 PGSC0003DMT400007944 AT4G18130.1 15273290
AT4G16250.1 PGSC0003DMT400007944 AT4G18130.1 19286967
AT4G16250.1 PGSC0003DMT400044822 AT5G35840.1 19286967
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g059870.2.1 Tomato cytosol 95.66 95.58
VIT_05s0077g00940.t01 Wine grape cytosol 86.46 86.54
PGSC0003DMT400069974 Potato mitochondrion 81.24 81.6
KRH36969 Soybean nucleus 80.89 80.39
KRH11936 Soybean nucleus 80.18 78.85
Os03t0309200-01 Rice nucleus, plasma membrane 74.87 75.54
AT2G18790.1 Thale cress nucleus 77.7 74.91
Bra022192.1-P Field mustard cytosol 77.88 73.83
TraesCS4D01G183400.1 Wheat plastid 75.49 73.28
Zm00001d028905_P001 Maize extracellular 75.22 73.21
TraesCS4B01G182400.1 Wheat plastid 75.49 73.16
TraesCS4A01G122500.2 Wheat plastid 75.4 73.07
HORVU4Hr1G053400.1 Barley plasma membrane 75.49 73.03
GSMUA_Achr3P08340_001 Banana nucleus 70.09 72.73
EER94971 Sorghum plastid 75.75 72.67
AT4G16250.1 Thale cress plastid 74.42 72.25
Zm00001d047632_P001 Maize plastid 74.42 72.13
Bra001650.1-P Field mustard cytosol 8.76 64.71
PGSC0003DMT400007944 Potato cytosol, plastid 60.0 59.68
Zm00001d025231_P001 Maize cytosol 8.23 58.12
Zm00001d000219_P001 Maize cytosol 5.4 54.95
PGSC0003DMT400044822 Potato plastid 53.98 54.46
PGSC0003DMT400040772 Potato cytosol 53.36 53.7
CDY42549 Canola cytosol 9.47 47.35
Zm00001d024238_P001 Maize cytosol 13.45 34.55
Protein Annotations
Gene3D:1.10.287.130EntrezGene:102577925MapMan:26.1.1.1MapMan:26.4.1.2Gene3D:3.30.450.20Gene3D:3.30.450.270
Gene3D:3.30.450.40Gene3D:3.30.565.10ProteinID:ABC72086ProteinID:ABC72086.1ProteinID:CAA74908ProteinID:CAA74908.1
EMBL:DQ342235InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674
GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585
GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987GO:GO:0016301GO:GO:0016740
GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0042803
GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_dom
InterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890UniProt:M1C7W5
InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360PFAM:PF00512
PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446EnsemblPlantsGene:PGSC0003DMG400024017PGSC:PGSC0003DMG400024017
EnsemblPlants:PGSC0003DMT400061712PIRSF:PIRSF000084PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109
PFscan:PS50112PANTHER:PTHR43719PANTHER:PTHR43719:SF12InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:Phytochrome
InterPro:Phytochrome_A-EInterPro:Phytochrome_cen-regSMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388
SUPFAM:SSF47384SUPFAM:SSF55781SUPFAM:SSF55785SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI0002957EBA
RefSeq:XP_006358209.1EMBL:Y14572SEG:seg:::
Description
Phytochrome B [Source:PGSC_GENE;Acc:PGSC0003DMG400024017]
Coordinates
chr1:+:45754365..45761834
Molecular Weight (calculated)
125372.0 Da
IEP (calculated)
5.921
GRAVY (calculated)
-0.141
Length
1130 amino acids
Sequence
(BLAST)
0001: MASGSRTKHS HHSSSQAQSS GTSNVNYKDS ISKAIAQYTA DARLHAVFEQ SGESGKFFDY SQSVKTTTQS VPERQITAYL TKIQRGGHIQ PFGCMIAVDE
0101: ASFRVIAYSE NACEMLSLTP QSVPSLEKCE ILTIGTDVRT LFTPSSSVLL ERAFGAREIT LLNPIWIHSK NSGKPFYAIL HRVDVGIVID LEPARTEDPA
0201: LSIAGAVQSQ KLAVRAISHL QSLPGGDIKL LCDTVVESVR ELTGYDRVMV YKFHEDEHGE VVAESKRSDL EPYIGLHYPA TDIPQASRFL FKQNRVRMIV
0301: DCHATPVRVT QDESLMQPLC LVGSTLRAPH GCHAQYMANM GSIASLTLAV IINGNDEEAV GGGRNSMRLW GLVVGHHTSV RSIPFPLRYA CEFLMQAFGL
0401: QLNMELQLAS QLSEKHVLRT QTLLCDMLLR DSPPGIVTQS PSIMDLVKCD GAALYYQGKY YPLGVTPTEA QIKDIVEWLL AYHGDSTGLS TDSLADAGYP
0501: GAASLGDAVC GMAVAYITSK DFLFWFRSHT AKEIKWGGAK HHPEDKDDGQ RMHPRSSFKA FLEVVKSRSS PWENAEMDAI HSLQLILRDS FKDAEASNSK
0601: AIVHAHLGEM ELQGIDELSS VAREMVRLIE TATAPIFAVD VEGHINGWNA KVAELTGVSV EEAMGKSLVH DLVYKESQET AEKLLYNALR GEEDKNVEIK
0701: LRTFGAEQLE KAVFVVVNAC ASKDYTNNIV GVCFVGQDVT GEKVVMDKFI NIQGDYKAIV HSPNPLIPPI FASDENTCCS EWNTAMEKLT GWSRGEIVGK
0801: MLVGEIFGSC CRLKGPDAMT KFMIVLHNAI GGQDTDKFPF SFFDRNGKYV QALLTANKRV NMEGDTIGAF CFIQIASPEL QQALRVQRQQ EKKCYSQMKE
0901: LAYICQEIKS PLNGIRFTNS LLEATNLTEN QKQYLETSAA CERQMSKIIR DVDLENIEDG SLTLEKEDFF LGSVIDAVVS QVMLLLREKG VQLIRDIPEE
1001: IKTLTVHGDQ VRIQQVLADF LLNMVRYAPS PDGWVEIQLR PSMMPISDGV TVVHIDLRII CPGEGLPPEL VQDMFHSSRW VTQEGLGLSM CRKMLKLMNG
1101: EIQYIRESER CYFLIILDLP MTRKGPKCVG
Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.