Factsheet for PGSC0003DMT400036075

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009514
PGSC0003DMT400022039
PGSC0003DMT400026065
PGSC0003DMT400026068
PGSC0003DMT400036075
PGSC0003DMT400037080
PGSC0003DMT400039600
PGSC0003DMT400044219
PGSC0003DMT400052100
PGSC0003DMT400056930
PGSC0003DMT400061712
PGSC0003DMT400069498
PGSC0003DMT400069974
PGSC0003DMT400075652
PGSC0003DMT400081469

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32950.1	PGSC0003DMT400044219	AT1G04400.1	11509693
AT2G32950.1	PGSC0003DMT400069498	AT1G06040.1	11226162
AT2G32950.1	PGSC0003DMT400039600	AT1G53090.1	12887588
AT2G32950.1	PGSC0003DMT400039600	AT1G53090.1	18812498
AT2G32950.1	PGSC0003DMT400039600	AT1G53090.1	21798944
AT2G32950.1	PGSC0003DMT400009514	AT1G75540.1	17965270
AT2G32950.1	PGSC0003DMT400075652	AT1G75540.1	17965270
AT2G32950.1	PGSC0003DMT400061712	AT2G18790.1	11752373
AT2G32950.1	PGSC0003DMT400069974	AT2G18790.1	11752373
AT2G32950.1	PGSC0003DMT400069498	AT2G31380.1	11226162
AT2G32950.1	PGSC0003DMT400036075	AT2G32950.1	18812498
AT2G32950.1	PGSC0003DMT400036075	AT2G32950.1	9755158
AT2G32950.1	PGSC0003DMT400022039	AT4G08920.1	11509693
AT2G32950.1	PGSC0003DMT400022039	AT4G08920.1	11752373
AT2G32950.1	PGSC0003DMT400037080	AT4G25560.1	12827204
AT2G32950.1	PGSC0003DMT400052100	AT5G14250.1	14597662
AT2G32950.1	PGSC0003DMT400026065	AT5G15840.1	18296627
AT2G32950.1	PGSC0003DMT400026068	AT5G15840.1	18296627
AT2G32950.1	PGSC0003DMT400026065	AT5G15840.1	18388858
AT2G32950.1	PGSC0003DMT400026068	AT5G15840.1	18388858
AT2G32950.1	PGSC0003DMT400026065	AT5G15850.1	18812498
AT2G32950.1	PGSC0003DMT400026068	AT5G15850.1	18812498
AT2G32950.1	PGSC0003DMT400056930	AT5G56280.1	14597662
AT2G32950.1	PGSC0003DMT400081469	AT5G64920.1	10488108
AT2G32950.1	PGSC0003DMT400081469	AT5G64920.1	12028569
AT2G32950.1	PGSC0003DMT400081469	AT5G64920.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005950.1.1	Tomato	nucleus	99.08	95.57
AT2G32950.1	Thale cress	nucleus	76.42	73.93
CDY12145	Canola	nucleus	75.96	73.37
CDY52540	Canola	nucleus	75.96	73.26
Bra005541.1-P	Field mustard	nucleus	75.04	73.24
VIT_12s0059g01420.t01	Wine grape	nucleus	75.19	72.63
KRH14801	Soybean	nucleus	74.58	72.15
KRH73341	Soybean	nucleus	73.51	71.75
GSMUA_Achr3P20130_001	Banana	nucleus	72.13	69.67
Zm00001d052138_P004	Maize	nucleus	71.06	67.64
Zm00001d018207_P001	Maize	nucleus	70.75	66.67
KXG31183	Sorghum	nucleus, plastid	70.9	66.62
Os02t0771100-01	Rice	nucleus	69.83	66.57
GSMUA_AchrUn_...	Banana	nucleus	65.08	66.51
PGSC0003DMT400034706	Potato	nucleus	69.07	65.46
TraesCS6B01G356400.1	Wheat	nucleus	68.61	64.65
TraesCS6D01G305800.1	Wheat	nucleus	68.61	64.09
TraesCS6A01G326100.1	Wheat	nucleus	68.3	63.71
PGSC0003DMT400015453	Potato	cytosol	15.01	26.49
PGSC0003DMT400039600	Potato	cytosol	32.62	24.54
PGSC0003DMT400049874	Potato	nucleus	31.55	20.32
PGSC0003DMT400031699	Potato	cytosol	16.85	12.53

Protein Annotations

EntrezGene:102592355	MapMan:18.4.16	MapMan:19.2.2.8.3.4.1	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.1	Gene3D:3.30.40.10
ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009628	GO:GO:0009640
GO:GO:0009641	GO:GO:0009649	GO:GO:0009791	GO:GO:0009987	GO:GO:0010119	GO:GO:0016567
GO:GO:0016604	GO:GO:0016740	GO:GO:0019538	GO:GO:0042802	GO:GO:0046283	GO:GO:0048573
GO:GO:0061630	InterPro:IPR001680	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986
UniProt:M1B388	PFAM:PF00400	PFAM:PF13923	EnsemblPlantsGene:PGSC0003DMG400013893	PGSC:PGSC0003DMG400013893	EnsemblPlants:PGSC0003DMT400036075
PRINTS:PR00320	ScanProsite:PS00518	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50089	PFscan:PS50294
PANTHER:PTHR44080	PANTHER:PTHR44080:SF2	SMART:SM00184	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF57850
UniParc:UPI000295C005	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	:	:	:

Description

COP1 homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400013893]

Coordinates

chr12:+:6437222..6448672

Molecular Weight (calculated)

73791.4 Da

IEP (calculated)

6.931

GRAVY (calculated)

-0.487

Length

653 amino acids

Sequence
(BLAST)

001: MVESSIGGVV PAVKGEGMRR MGDKEEGGSV RDEEVGTVTE WELDRELLCP ICMQIIKDAF LTACGHSFCY MCIVTHLHNK SDCPCCSHYL TTSQLYPNFL
101: LDKLMKKTSA RQISKTASPV EQFRHSLEQG CEVSIKELDA LLLMLSEKKR KLEQEEAERN MQILLDFLQM LRKQKVDELS EVQHDLQYIK EDLNSVERHR
201: IDLYRARDRY SMKLRMLADD PIGKKPWSSS TDRNFGGLFS TSRNAPGGLP TGNLTYKKVD SKAQISSPGP QRKDTSISEL NSQHMSQSGL AVVRKKRVNA
301: QFNDLQECYL QKRRQLANKS RVKEEKDADV VQREGYSEGL ADFQSVLSTF TRYSIEFDRD DELFATAGVS RRIKVFDFSS VVNEPADAHC PVVEMSTRSK
401: LSCLSWNKYT KNHIASSDYD GIVTVWDVTT RQSVMEYEEH EKRAWSVDFS RTEPSMLVSG SDDCKVKVWC TKQEASVLNI DMKANICCVK YNPGSSVHIA
501: VGSADHHIHY YDLRNTSQPV HIFSGHRKAV SYVKFLSNNE LASASTDSTL RLWDVKDNLP VRTLRGHTNE KNFVGLSVNN EFLSCGSETN EVFVYHKAIS
601: KPVTWHRFGS PDIDEADEDA GSYFISAVCW KSDSPTMLAA NSQGTIKVLV LAA

Best Arabidopsis Sequence Match ( AT2G32950.1 )
(BLAST)

001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA

Arabidopsis Description

COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.